LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g00438	ATGGGAACAATTTTCATCCTCCAATTAATCCCTCTTGCAAACTCACTATCATTCAATTACCCCAACTTTAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTCTATTCTAAAAGGAGCTATCCAACTCACATCCAACACCATTGACCAAAACAACAATTTCAGTGTTGGGAGAGTCACAAGTTATCAACAGATGCTCCTCTGGGATGTGAACTCTGGAAAGCTTGCCGATTTCACTACTAAATTTTCCTTTGTTATTTTTTCAGAAAAGAAAAACTATGGAGATGGAATGGCATTCTTCCTTGCTGATCCTAGACTCCCACTTCTAAAGAATATCAAAGAAGGAGGTGGTCTTGGGCTTATGGATGGCGAACAAGCAGTGAATTCAACTCAACACCCAGCTAAATACCCGTTTGTAGCAGTGGAGTTTGACACCTTCAACAACGTTTGGGACCCTCCATATTCTGGCTCTCATGTAGGTCTGAATTTCAACTCCATGAAGTCTAACGTATCTAAGCCATGGTTGACAGATATTCAAATTTGGAAAATTTATAATTGCAGGATTGCATACAATTCAAGCACTCTAACTTTGAGCGTTTCATTGACCATGCACAATGATAGTAAAACGGTTAAAGAACATATTTCATGCAAGGTTGATCTGAGAGATTACTTACCAGGGAGGGTTATTCTTGGTTTCTCCGCCGCAACAGGAATATTGTATGAAGTGCATACATTGAGATCATGGTCATTTAATTCAAGTCTACAAAGCGATGAGATAAAACAAGAAGGAGAGAAACTAGGATCGTGGGTAGGGCTTGGAATCGGTGTAGGGTTCGTTCTGAGTTTGTTAGGGCTGGTTTGTACTTTATTGTGGAAGAGGAGTAGAGGGAGAAAAGATGAGTTAGTTTTTGATCTCAAGATGGGTGATGAATTCCCAAAGGGCACTGGACCTAAGAGCATTTCCTATAATGAGCTAGCATGTGCTACAAACAAATTTGCCGAGTCAGAGAAGCTGGGGCAAGGTGGTTTTGGTGGGGTGTATAAAGGTTATTTGAAAGACATGAAGTCCTATGTTGCTATCAAGAGGATATCAAGAGAGTCTAGACAGGGAATGAAGGAATATGTGACAGAAGTGAAGGTAATAAGTCAATTGAGACATAGGAATTTAGTACAACTTATTGGTTGGTGTCATACGAAGAATGACCTTGTCCTCGTGTATGAGTACATGCCAAATGGAAGCTTAGATTCACATCTATATGGTGTGAAAAGCTTCTTAACATGGAAAGTGAGGTATAATATAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGGGATATAAAACCAAGCAACATAATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACAAACCACACGTATAGCTGGGACTAGGGGCTATATTGCCCCTGAATATTTCATTTCAGGAAAGGCTACCAAGGAATCTGATATATACAGTTTTGGGGTTGTGTTATTGGAGATAGCTAGTGGAAGAAAATCTGTTGAAGTAGAAGCCGAGGAGGGCCAAATAGCTGTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGAAGGGTCCTTGAAGCTGCTGACCCAAAGTTATGTGGAGAATTTGATGAGAAGCAAATGGAACGTTTAATGGTTGTTGGCCTTTGGTGTGTTCATCCAGATACCTCATTCAGGCCTTCTATAAGGCAAGTGATTCAGGTCCTTATATTTGATTCACTTTTGCCCATTCTCCCAGAGACCATGCCTGTGGCAACCTATCTTCCTCCAACGATAAAAGCACTTTTTGGTTCAGTTTCGTCTTTCTTTTGGGGTTCAAGTTAG	1920	0.4104	MGTIFILQLIPLANSLSFNYPNFKNGDVKWEGDASILKGAIQLTSNTIDQNNNFSVGRVTSYQQMLLWDVNSGKLADFTTKFSFVIFSEKKNYGDGMAFFLADPRLPLLKNIKEGGGLGLMDGEQAVNSTQHPAKYPFVAVEFDTFNNVWDPPYSGSHVGLNFNSMKSNVSKPWLTDIQIWKIYNCRIAYNSSTLTLSVSLTMHNDSKTVKEHISCKVDLRDYLPGRVILGFSAATGILYEVHTLRSWSFNSSLQSDEIKQEGEKLGSWVGLGIGVGFVLSLLGLVCTLLWKRSRGRKDELVFDLKMGDEFPKGTGPKSISYNELACATNKFAESEKLGQGGFGGVYKGYLKDMKSYVAIKRISRESRQGMKEYVTEVKVISQLRHRNLVQLIGWCHTKNDLVLVYEYMPNGSLDSHLYGVKSFLTWKVRYNIALGLASALLYLQEEWEQCVIHRDIKPSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTRIAGTRGYIAPEYFISGKATKESDIYSFGVVLLEIASGRKSVEVEAEEGQIAVVEWVWKLYGLGRVLEAADPKLCGEFDEKQMERLMVVGLWCVHPDTSFRPSIRQVIQVLIFDSLLPILPETMPVATYLPPTIKALFGSVSSFFWGSS	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g00438	639	Gene3D	Phosphorylase Kinase; domain 1	317	408	-	-
	Spst3g00438	639	CDD	lectin_legume_LecRK_Arcelin_ConA	16	254	IPR001220	GO:0030246
	Spst3g00438	639	ProSiteProfiles	Protein kinase domain profile.	332	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g00438	639	FunFam	Lectin-domain containing receptor kinase A4.3	409	621	-	-
	Spst3g00438	639	ProSitePatterns	Legume lectins beta-chain signature.	139	145	IPR019825	-
	Spst3g00438	639	SMART	serkin_6	332	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g00438	639	FunFam	L-type lectin-domain containing receptor kinase IX.1	317	408	-	-
	Spst3g00438	639	CDD	STKc_IRAK	338	601	-	-
	Spst3g00438	639	FunFam	L-type lectin-domain containing receptor kinase IX.1	14	263	-	-
	Spst3g00438	639	SUPERFAMILY	Protein kinase-like (PK-like)	317	621	IPR011009	-
	Spst3g00438	639	SUPERFAMILY	Concanavalin A-like lectins/glucanases	14	259	IPR013320	-
	Spst3g00438	639	Gene3D	Transferase(Phosphotransferase) domain 1	409	617	-	-
	Spst3g00438	639	Gene3D	-	13	267	-	-
	Spst3g00438	639	Pfam	Legume lectin domain	15	261	IPR001220	GO:0030246
	Spst3g00438	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Spst3g00438	639	ProSitePatterns	Protein kinases ATP-binding region signature.	338	361	IPR017441	GO:0005524
	Spst3g00438	639	Pfam	Protein kinase domain	333	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst3g00438	639	PANTHER	-	44	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g00438	Spst-Chr3	7472917	7474836	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g00438	5	619	Receptor kinase-like Gene Family	AT5G10530	48.336	0.0	541

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Spst3g00438		Pkinase	4.3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g00438	-		-	gmx:100780181	1026.16