Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00434 ATGGCTGGTTGTGGATTCATTTTGTTGATCCTAACCATCCCCATTGCAATTTCAAATGCTCAGATTCAGTCTTTTGAGTACCCCAACTTCAGTTCAACTTATATAAAGCAGCTTATGCTGGAAGGTAATGCTTCTACAGCAGGTTCTGCTATCAAACTCACAGTGAACGCAACGGACCCAAGCAACATGTTCGGGACCGCAGGACGAGTCACGCATCCTGTGCAGATAAACCTTAGGGACAAGAATTCAAATGAACCAAGAGACTTCGTTACCAACTTTTCCTTTGCTGTTTCCTCAAATAAGAGTTCTTATGGAGATGGTTTGGCATTCTTTCTTGCAAGCCCAAATCTGCCATCCACAAATGATATGGTACAACTAAGAGGAGGAAGTCTTGGCATTGGCCTTACGGATGGTCGGCAAGAGCTTCACCCGAGAGGTTATCAATTTGTGGCAGTGGAGTTTGACACATACACAAACCCCTGGGACCCAGTTGGCGCACATGTAGGTATAAATATCAATGACATGAACTCTAAAATACATGAGACATGGTGGATGAATATTACACAAGATGAAGTTAATTGTAACTGTAGTATTGTATACGATTCTAGAAACAATATTTTGAATGTCTATTTCACTGGGTACATATTCATTGATGGAAAGGTAACGCAGACTACACAGCATCTTTCATTCCCCATTAATATAACACAACAATTACCAGACTCGGTTATTATTGGCATATCAGCTGCAACAGGAAAATATTATGAGGAACATACACTGCTCTCATGGTCATTTAGCGCAACCCCATCAACTAAGGACGACCCAAAGAAGGAAAGAAAGGTTATCATCATAAAAATGTTGGAGGGAATAGGAATTGGTGCTGGTTTGTTTTTTATTATGTTCGGGTTGGTCCACATTTTATTATGGAGGATGGCCAAGGGGAGAGAAGTAGATCACACTTCAGAAGCCATTTCTGATACAAATATGGATGATGAATTCCAAATGAGCTCTGGACCTAAGAAGATTAGTTATCATGAATTGGCAACTGCAACCAACAACTTTGAAGAGACGCAGAAGCTTGGCCAAGGAGGGTTCGGTGGTGTTTATAAAGGCTATTTCAAAGACTCCAACACCTATGCTGCTATAAAGAGGATATCAGCAGATTCTAAGCAGGGTGTAAAACAATACACAGCAGAAGTGATGATCATTAGCCAATTGAGGCACAAGAATTTGGTGAAACTCACTGGTTGGTGCCATAAGAAGAATGATTTTCTCTTGATATACGAGTACATGGAAAATGGCAGCTTAGACTCTCACCTTTTTCGAGGAGAAAGTATATTGTCATGGGAGGTGAGGTACAGCATAGCCTTAGGTTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGCGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATCCTAAGCTTGGGGACTTTGGCCTTGCTAGGCTGGTGGATCATGATAAAGGGTCTGAAACCACAGACGTGGCTGGGACAATGGGTTACCTAGCTCCTGAGTACATGAACACAGGCCAGGCTCGAAAGGAATCTGACATATTCAGTTTTGGGGTTGTTGTGTTGGAGATAGCCACAGGAAGAAAAGCCATTCACCACAAACACATGGAGGGTGAAGTATCAGTGGTTGAGTGGGTGTGGGGGCTCTATGGATTGAGGAATCTGCTTGCAGCAGTAGATCCAAACCTGCATGGGGAATTTGATGAGCAGCAAATGGAGTGCTTACTGATTGTTGGTCTTTGGTGTGCTAATCCAGATTCTGCATCCAGACCCCCTGTAAGGCAAGTGATTAACGTCCTTAACTCTGAAGCCTCTTTACCAATTCTCCCACAACAGATCCCAGTGCAGGGCTGTTTATGA 1926 0.4263 MAGCGFILLILTIPIAISNAQIQSFEYPNFSSTYIKQLMLEGNASTAGSAIKLTVNATDPSNMFGTAGRVTHPVQINLRDKNSNEPRDFVTNFSFAVSSNKSSYGDGLAFFLASPNLPSTNDMVQLRGGSLGIGLTDGRQELHPRGYQFVAVEFDTYTNPWDPVGAHVGININDMNSKIHETWWMNITQDEVNCNCSIVYDSRNNILNVYFTGYIFIDGKVTQTTQHLSFPINITQQLPDSVIIGISAATGKYYEEHTLLSWSFSATPSTKDDPKKERKVIIIKMLEGIGIGAGLFFIMFGLVHILLWRMAKGREVDHTSEAISDTNMDDEFQMSSGPKKISYHELATATNNFEETQKLGQGGFGGVYKGYFKDSNTYAAIKRISADSKQGVKQYTAEVMIISQLRHKNLVKLTGWCHKKNDFLLIYEYMENGSLDSHLFRGESILSWEVRYSIALGLASALLYLQEECEKCVLHRDIKSSNIMLDSNFNPKLGDFGLARLVDHDKGSETTDVAGTMGYLAPEYMNTGQARKESDIFSFGVVVLEIATGRKAIHHKHMEGEVSVVEWVWGLYGLRNLLAAVDPNLHGEFDEQQMECLLIVGLWCANPDSASRPPVRQVINVLNSEASLPILPQQIPVQGCL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00434 641 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524
Spst3g00434 641 Gene3D - 21 286 - -
Spst3g00434 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Spst3g00434 641 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Spst3g00434 641 Pfam Legume lectin domain 23 276 IPR001220 GO:0030246
Spst3g00434 641 CDD STKc_IRAK 359 623 - -
Spst3g00434 641 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 268 IPR013320 -
Spst3g00434 641 SMART serkin_6 353 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00434 641 FunFam Lectin-domain containing receptor kinase A4.3 430 641 - -
Spst3g00434 641 CDD lectin_legume_LecRK_Arcelin_ConA 24 267 IPR001220 GO:0030246
Spst3g00434 641 FunFam L-type lectin-domain containing receptor kinase IX.1 338 429 - -
Spst3g00434 641 Gene3D Transferase(Phosphotransferase) domain 1 430 639 - -
Spst3g00434 641 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00434 641 Gene3D Phosphorylase Kinase; domain 1 338 429 - -
Spst3g00434 641 SUPERFAMILY Protein kinase-like (PK-like) 336 632 IPR011009 -
Spst3g00434 641 Pfam Protein kinase domain 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00434 641 PANTHER - 56 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00434 Spst-Chr3 7450874 7452799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00434 9 637 Receptor kinase-like Gene Family AT5G10530 42.523 8.68e-164 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst3g00434 Pkinase 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00434 - - vum:124829843 971.459