Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00427 ATGGCGATGGTTTGTCTCAGGAAATTGGAGTTTAAAGGAAAGGGAAAAGGATCTTACATTGATACAAGTAACCATCCGATGCCTCGCACAAGACGTTGGACAATGAGAAAGTTGAACTTTCTGAGGCCTCAGATCTCTGCACTGGGAAGATCCCATTTCTCAACTGCCGCTGAACCATCGTCCAGTAAGCGCAATCCACTGGTCCTGTATGTAATTTCATATCAGAGGGTTCCAAACCTTATTGGGGGCAGTTTTGTTGACTCAAAATCATCATCTGTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCTCAAGTTCCTTTGTCTACGGATGAAGAGTTTAAGGCAGCTGTATCTGCAGCAAAGAAGGCATATCCATCATGGCGAAGCACTCCAATTACAACACGCCAACGTGTTATGTTGAAGTTTCAAGAACTAATACGCAGAGATATGGATAAACTTGCTCTGAATGTGACCACTGAACAAGGAAAGACGTTGAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATGTTTCCAATGTATCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTTTGCGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCGTTGTGGATGTTCCCTATGGCTGTCACTTGTGGTAACACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTAGCATTGGAGGCTGGTTTGCCAGAGGGTGTCTTAAATATAGTTCATGGAACACATGATATTGTGAATGCTATTTGCGATGATGATGACATCAAAGCCATATCTTTTGTTGGGTCAAATGTTGCTGGAATGCACATATATTCACGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAACATGGGAGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGACGCAACTCTAAATGCTTTAGTTGCAGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAATCATGGGAAGCTAAACTTGTAGAGCGTGCAAAAGCTCTCAAGGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCAGTGATCAGCAAGCAGGCAAAGGATAGAATACACAGACTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTGGATGGAAGAAATATAGTGGTCCCAGGATATGAATCGGGAAATTTTATTGGCCCAACCATCTTATCAGATATCACTGCCAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTCCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACACTATCAACAGTAACAAGTACGGAAATGGTGCTTCTATATTTACTTCATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATAGAGGCTGGCCAGGTTGGCATCAATGTTCCCATTCCAGTTCCTTTGCCCTTCTTCTCATTCACTGGCAACAAGGCATCGTTTGCCGGTGATCTCAACTTCTACGGCAAGGCAGGGGTTAACTTCTTTACACAGATCAAGACAATAACACAGCAATGGAAGGATTCAAGTGGTGGTAGCAAGATTAACTTGGCCATGCCAACCTCTCAAAAATAG 1716 0.4341 MAMVCLRKLEFKGKGKGSYIDTSNHPMPRTRRWTMRKLNFLRPQISALGRSHFSTAAEPSSSKRNPLVLYVISYQRVPNLIGGSFVDSKSSSVIDVINPATQEVVSQVPLSTDEEFKAAVSAAKKAYPSWRSTPITTRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGGSKSWEAKLVERAKALKVNAGTEPDTDLGPVISKQAKDRIHRLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDITANMECYKEEIFGPVLLFMEADSLEEAINTINSNKYGNGASIFTSSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKDSSGGSKINLAMPTSQK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00427 571 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 96 530 IPR016162 GO:0016491
Spst3g00427 571 SUPERFAMILY ALDH-like 67 554 IPR016161 GO:0016491
Spst3g00427 571 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 322 522 IPR016163 GO:0016620
Spst3g00427 571 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 79 553 IPR010061 GO:0004491
Spst3g00427 571 Pfam Aldehyde dehydrogenase family 85 549 IPR015590 GO:0016491
Spst3g00427 571 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 81 328 - -
Spst3g00427 571 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 347 358 IPR016160 GO:0016491
Spst3g00427 571 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 30 569 IPR010061 GO:0004491
Spst3g00427 571 CDD ALDH_F6_MMSDH 77 553 IPR010061 GO:0004491
Spst3g00427 571 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 322 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00427 Spst-Chr3 7374234 7387919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00427 32 537 Aldehyde Dehydrogenase Gene Family AT2G14170 80.040 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00427 K00140 - gmx:100791508 974.926