Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00426 ATGTCTTTTCTCTGGTTTCTTAATCTCGCCCTCAAATGCCTTGATCATTTTGCATGGCCTCTTCTTGCTTTGGGATACCCTCTATGTGCTTCTGTACAAGCCATTGAGACTGATTCATATGACGAAACTAGGGATTTGATCTCATATTGGATACTTCTCTCGCTAATATACCTCTTTGATTATGCATTTTTTAGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACATTAAGCTAATGATCATCTTCTGGCTCATTATGCCTGACTTTGGACGAGCTTCTTATGTCTACAATAAACTTATTCGCACTTGCATCTCCTTAAATTCACAAGCAGTCATACGTAGTTTAAATAACTGGAAGAAGTTTTTTGTCAAGAAAGATCACTTTTTACTGCATGCAGAGAGATATGTAGAAGAGAATGGAACTGAAGCCTTAATGAAACTCATTGAGAGCAAGAACACGACTGAAAAACCTGTTGCAGAAGCAACAAATGCAAGTAGGGTTACTGACCATAAAGAAACGCAACAGGCAAATGAGAAAAGGCTCCAAACAGAGCACAAAGCCATCAAAGATTTGGAGGTGATCGAGAAAAAAGAAATTCCTGCTGGCAAGCAAGAAATTTCTGTGGTGCCTAAACTTGCGCACAGTGAGAATGCTTCACCTGCCATGTTGGAAACTAAAGGAATAGTGGTGAAGGACAAAGCTGGTCGAGAACTTCCTCAGATTTCGATACATGAGGAAGTGCAGAAGGAGTGGACTTGCGCTTTATGCCATGTAACAACAACGAGCGAGAACACCTTGAATGCGCACCTGAAAGGGAGAAAACACAGGGCTAAGGAGGAAGCTATGAAGGCAAAGAATCAACCTGTTTCACAGAAGCTGAAAAATGATCATTCCGAAGAGGAATGGAGACTGAAGAACATTATGAATCAGCTAAATTCCAAGACCAGGAATGGAGAGAAACTGCAAAAGAAAACATGTCAACCTGCTTGGAAGAATAATTCCAAATTTAGATGTGAAGTCTGTAATGTGGAATGCCCTTGCGAGATTACCTTAGCCTCTCACAAAAATGGGAAGAAGCATTTGGCTAAAACTATAAAAATATACAAGGTTTCTTTAGTTGAAAGGCACAATGCTTGA 1137 0.4019 MSFLWFLNLALKCLDHFAWPLLALGYPLCASVQAIETDSYDETRDLISYWILLSLIYLFDYAFFRLLQWFQFWPYIKLMIIFWLIMPDFGRASYVYNKLIRTCISLNSQAVIRSLNNWKKFFVKKDHFLLHAERYVEENGTEALMKLIESKNTTEKPVAEATNASRVTDHKETQQANEKRLQTEHKAIKDLEVIEKKEIPAGKQEISVVPKLAHSENASPAMLETKGIVVKDKAGRELPQISIHEEVQKEWTCALCHVTTTSENTLNAHLKGRKHRAKEEAMKAKNQPVSQKLKNDHSEEEWRLKNIMNQLNSKTRNGEKLQKKTCQPAWKNNSKFRCEVCNVECPCEITLASHKNGKKHLAKTIKIYKVSLVERHNA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00426 378 SMART c2h2final6 251 275 IPR013087 -
Spst3g00426 378 SMART c2h2final6 336 360 IPR013087 -
Spst3g00426 378 SMART ZnF_U1_5 248 282 IPR003604 GO:0003676|GO:0008270
Spst3g00426 378 SMART ZnF_U1_5 333 367 IPR003604 GO:0003676|GO:0008270
Spst3g00426 378 Pfam Zinc-finger of C2H2 type 336 360 - -
Spst3g00426 378 Pfam Zinc-finger of C2H2 type 251 275 - -
Spst3g00426 378 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Spst3g00426 378 SUPERFAMILY beta-beta-alpha zinc fingers 333 364 IPR036236 -
Spst3g00426 378 Coils Coil 267 287 - -
Spst3g00426 378 MobiDBLite consensus disorder prediction 155 180 - -
Spst3g00426 378 SUPERFAMILY beta-beta-alpha zinc fingers 242 287 IPR036236 -
Spst3g00426 378 Coils Coil 304 324 - -
Spst3g00426 378 Gene3D Classic Zinc Finger 242 287 - -
Spst3g00426 378 PANTHER HVA22-LIKE PROTEINS 5 165 IPR004345 -
Spst3g00426 378 Gene3D Classic Zinc Finger 313 366 - -
Spst3g00426 378 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00426 Spst-Chr3 7367078 7370212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00426 250 363 C2H2 Transcription Factor Family AT2G19380 28.333 9.66e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00426 - - pvu:PHAVU_002G214600g 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00426 3 7367078 7370212 Spst3g00426 3 7367078 7370212 ECH