Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00421 ATGGATACTGTGAATAATCGGTGTCAGGACGGGGAAGAAGCGGCGTCGGTGGCGGCGGGGCTTCCCATGCATGTCGATACTTTCCATTACGTCAATGGCTCCGATGAAGGGGAAGAAGCTGCAGCTACTCTACTTGCACATGCTTCTTCTACTGTGCATACCAGAACCAGCGAACTCACCATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCTGCTGTTACGCCACAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGTCAAATAATGTCCCCACCTCGGACTTTTTGTTGCAGCAAAACTGTCAGGACGTTAGGGAAATGAATGATCCTTCCCGATGTTCGAAGCTCTCACGAAGAATTGCATCGCTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGATACTCTTGTCGCAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGACAATTTGCATCGCTGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAGGCAATGGTACACCTTGCCCAGAATCTACTGAACGTAGATGTCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGCCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCTAATAAGGATGATTATTTTGCGTATCTGGATTGTTGTGGCCATGAGAGGATAATTTATTACCAAGTATCAGCTGAGCAAGTTCATGTTTCCATCTTTCCTAATGTGACTAGGGCAATCTTACAGTACCCAATTACTGATTTTCATTTTCATGCCTTGTTGATTTTGAAGGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAGCAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGCAGCAGAACATTCTTGTGCTAAGCAGGACAAAGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCAAATGGATTCCCGACGGACCCCTGAGAAGACAAATGATCAGTTTATTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTTCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGAACCGAGTTTGAGATTCCCGCAGGTTTTGATGAACAGAAAGTTTTGAAGGAATGGGTTATTGACAATGTTCTGGTGGGACAGCTTCCCGTTTTTTCCCAGAATGAAACGCGCAGCCTTACTCGCCAAGAAAATTCCCTTCTCATATATAATCTTCCCTCCTTCAAACGCTTCCCTCCCACAAATACAGTTAGTTTGTTAGTTAGTTAG 1356 0.4491 MDTVNNRCQDGEEAASVAAGLPMHVDTFHYVNGSDEGEEAAATLLAHASSTVHTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQEMSNNVPTSDFLLQQNCQDVREMNDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSGNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKDDYFAYLDCCGHERIIYYQVSAEQVHVSIFPNVTRAILQYPITDFHFHALLILKGTLRDLTKAGRIAFEQNELDTSADIKPSKAAAEHSCAKQDKEGSPEETKPVQMDSRRTPEKTNDQFIIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQKVLKEWVIDNVLVGQLPVFSQNETRSLTRQENSLLIYNLPSFKRFPPTNTVSLLVS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00421 451 CDD ZnF_GATA 191 226 IPR000679 GO:0006355|GO:0043565
Spst3g00421 451 Pfam tify domain 56 86 IPR010399 -
Spst3g00421 451 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 227 - -
Spst3g00421 451 MobiDBLite consensus disorder prediction 305 342 - -
Spst3g00421 451 ProSitePatterns GATA-type zinc finger domain. 192 219 IPR000679 GO:0006355|GO:0043565
Spst3g00421 451 Pfam GATA zinc finger 192 226 IPR000679 GO:0006355|GO:0043565
Spst3g00421 451 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Spst3g00421 451 SMART GATA_3 186 242 IPR000679 GO:0006355|GO:0043565
Spst3g00421 451 MobiDBLite consensus disorder prediction 311 341 - -
Spst3g00421 451 Pfam CCT motif 123 164 IPR010402 GO:0005515
Spst3g00421 451 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Spst3g00421 451 PANTHER GATA TRANSCRIPTION FACTOR 28 40 387 IPR045280 GO:0006355
Spst3g00421 451 Gene3D - 186 229 IPR013088 GO:0006355|GO:0008270
Spst3g00421 451 SMART tify_2 52 87 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00421 Spst-Chr3 7309203 7318372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00421 58 229 Tify Gene Family AT1G51600 55.556 3.69e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst3g00421 CCT 5.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00421 - - gmx:102669848 478.018