Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00408 ATGACTAGAAAGAGGATACAGATCAAGAAAATTGACAACATCAGTTCTAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGCTGTCTACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGTTTGATCGCCATTCAGCAATGCATAGATTGGATCAACATGCTAGTGTAAGGCGCGATCCCTCTATTGAGCTTCAGGACTGCATCTTCCTCGTTGTAATTTTAGCTCCCATGGATAAGTCAGTACCTTTGCGATTAGTTTCCTACAAAACTGTAACTGTCAAATCTGGAATTCATGTTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCGTGAACTGAGGCAGTTGCATGGGGAAGATCTACAAGGATTGACATTACAAGAACTGCAGAAAATAGAGGAACATCTTAAAAGAGGTTTGACCAGTGTTTCAAGAGTAAAGGTTTGTGCCCTATGA 555 0.4144 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERFDRHSAMHRLDQHASVRRDPSIELQDCIFLVVILAPMDKSVPLRLVSYKTVTVKSGIHVESDSNDILRKKVEDKNRELRQLHGEDLQGLTLQELQKIEEHLKRGLTSVSRVKVCAL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00408 184 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Spst3g00408 184 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Spst3g00408 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 Coils Coil 132 152 - -
Spst3g00408 184 ProSiteProfiles K-box domain profile. 125 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g00408 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 FunFam Transcription factor, MADS-box 13 82 - -
Spst3g00408 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00408 184 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Spst3g00408 184 Pfam K-box region 134 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g00408 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00408 Spst-Chr3 7160995 7166490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00408 1 180 MADS-box Gene Family AT2G22540 45.304 1.37e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst3g00408 K-box 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00408 - - gmx:100812951 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00408 3 7160995 7166490 Spst6g00599 6 5397438 5403709 PCT