Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00405 ATGGACGGCGGCGGCGGCGCAGGAAACCGAGCGGAGGCGGAGCGGTGGCTGTATACCGCCAACAAGCTGCTAAGCGCGCGTGACCTGCACGGAGCGCGCTCCTTCGCGATTCGCGCGCGTGAATCCGACCCGACTTATGAGGCCTCCGAGCACCTCTTGACGGTGATCGACACGCTCCTGGCGGGGGAGTCGCGAATCAACGACCAGCACCGCGACTGGTACGGGATCCTCCAAATTCTCCGCTACACCACCAACATGGACCACATCGCCGCCCAGTACCGCCGCCTCGCCCTCCTCCTCGATCCCAGCCGCAACCTCTTCGCGTTCTCCAGCCACGCCTTTTCACTCGTCCACGAGGCCTGGTCCGTACTCTCCAACCCCGCCAAGAAAGCCATGTACGACAGCGATCTCCGGCTACTCACCACTCCGCCGCCGCAGTCACCCCCGCGTCCTCCTCCGCAACCCATGCCCAGGCGAAATGCTAGATCGAGGGATGACTCGGCCGAGCCTCGGCCGAACCCCAATCGTCCCGAGTCTACCGAGTCAACTCGGCAGACTCCAACCGTAGAATCCGACGAGGGAACGAGTTTCTGGACCTCGTGCCCATACTGTTACGTTTTGTATGAATATCCGAAGGGTTACGAGGAGTGTACCTTGAAGTGTCAGAGTTGCCGGAGGGGGTTTCACGCGGTGGTGATACGTTCGCCGCCGCCGTTTACTGGGAAAGATGGTTCCTATTGTAGTTGGGGTTTTTTCCCGTTAGGGTTTTCTGGGAATTCGAAGGACGTGAACGGGGTTTCTTCCAATTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTTTGAGGGGGTCATCTTATAGGAAGCCTCAGAGGAATTGGGATTACTATGATGACGAGGCTGCCGCCGCGTTCATCGAGTTATCCGACCCGAGTGATGAAGATTCCGGTGATGGGGATTGGAGAGTTGTGAAGAGGAGGGGGAAGAAGAGGAGTAGAGGTAATAAAAATTCTGGTGATGGAAGGAGGGAAACTGTGGAAAGACCTAGGAGGGGTGTTCGTACAGGGCATGAGAATGTGGGTTCTGGTGATCCTGCTAGTGCTAGTGCTAGTGCTAGTGCTAATACTAGTGCTGATGCTAATGCCAAAGCTAATGCTGTCACTGCTTTGACTTCTGGTGCAAAGACGGAGCCTAGTAAGAAGGCTGCGTTGGGTGGTTCGAGAAGGAAGGGTGCTGGAAACTTGGGGAAGTTGGATTTGAATGTAGAGTTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTGCGCGATCGTGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTTCTCAGTAGCTTGCCCATTCTCAATGTTGTGGGAGATGATAAGGTTAAGGGTCATTAG 1440 0.5556 MDGGGGAGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDQHRDWYGILQILRYTTNMDHIAAQYRRLALLLDPSRNLFAFSSHAFSLVHEAWSVLSNPAKKAMYDSDLRLLTTPPPQSPPRPPPQPMPRRNARSRDDSAEPRPNPNRPESTESTRQTPTVESDEGTSFWTSCPYCYVLYEYPKGYEECTLKCQSCRRGFHAVVIRSPPPFTGKDGSYCSWGFFPLGFSGNSKDVNGVSSNWNPFSPLFPCPLRGSSYRKPQRNWDYYDDEAAAAFIELSDPSDEDSGDGDWRVVKRRGKKRSRGNKNSGDGRRETVERPRRGVRTGHENVGSGDPASASASASANTSADANAKANAVTALTSGAKTEPSKKAALGGSRRKGAGNLGKLDLNVEFSNEVEEPSRGVRDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVGDDKVKGH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00405 479 Gene3D DnaJ domain 66 141 IPR036869 -
Spst3g00405 479 MobiDBLite consensus disorder prediction 307 375 - -
Spst3g00405 479 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Spst3g00405 479 MobiDBLite consensus disorder prediction 142 158 - -
Spst3g00405 479 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Spst3g00405 479 SUPERFAMILY Chaperone J-domain 68 137 IPR036869 -
Spst3g00405 479 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 352 - -
Spst3g00405 479 MobiDBLite consensus disorder prediction 173 194 - -
Spst3g00405 479 Pfam DnaJ domain 72 134 IPR001623 -
Spst3g00405 479 MobiDBLite consensus disorder prediction 138 194 - -
Spst3g00405 479 SMART dnaj_3 71 129 IPR001623 -
Spst3g00405 479 MobiDBLite consensus disorder prediction 361 375 - -
Spst3g00405 479 CDD DnaJ 72 126 IPR001623 -
Spst3g00405 479 MobiDBLite consensus disorder prediction 333 356 - -
Spst3g00405 479 MobiDBLite consensus disorder prediction 388 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00405 Spst-Chr3 7101570 7103009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00405 12 478 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 43.333 4.83e-110 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00405 - - var:108324594 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00405 3 7101570 7103009 Spst6g00598 6 5384458 5385960 PCT