Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00397 ATGGAGCTGCATCACAGAAAGTTGGGTCTACTTGACCCTCCAGCTCCTCCTTACATAGAGGATGGTTCGAAACAAAGCTCCGACAAACACATCAAAATCACATACTTGATCGTCTGTTTTTCCATTGCAGCTGCTGCTTTCGTTGTTCTCTGCTGCTACGCCATCTATGCCAAGTATTTCTCCCCTCGGAACAGGCCTGTGAGGAGAACCTTGTCACGGCCTCAAACTGAGGAAGATTTCTTAGGCGATGAAGAACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACCGGTCTCCAACAATCAGTGATTGGTGCCATCGCCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGACGGAGTGTTCCGTTTGTTTGAGCGAGTTTCAAGAGGATGAGAGTCTCAGGCTTCTGCCAAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACGTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTTACTGACCCCACAAGGGTTCCATCCATGGACCCTAATGCTTTTGGTTCGAGGTCTTTTGTGGAGATGGAGGTTTTGGAAAGTGATGGTGGAGGTGAACATGCCCAAGCTCATGCTCATGCTCAAGCACAAGATGGTGAGGATTTGTTGAGGGGTGAGGCAGAGGAAGAAGTTGAAGTGTGTGAAACTGAAAATGTGGTTTCAGAAATGGTGGCTGTGCAGCCAAGAAGATCAGTGTCTCTGGATTCGTCTTCTGCTGCTAAGATCAGTCTTTCTCTTGCAACTGTGGTGTCAGGGGAATCTCATGGGAATAATTCAAAGAGGGTTTCTGGGAATGGGAATTCGGCATCTAAAGGTGGTTGTAGTTCTTCTTCTTCATCCACTAGTTCCATAAAGAGGTCACGATCCTTCAATGCCAAACACTTAATATCATGGTATAGCCGCAGCCAGAGAAAGCCAAACGCTCCATTGAGAAGCTTCTGA 999 0.4785 MELHHRKLGLLDPPAPPYIEDGSKQSSDKHIKITYLIVCFSIAAAAFVVLCCYAIYAKYFSPRNRPVRRTLSRPQTEEDFLGDEEHGPVVDHPIWYIRTTGLQQSVIGAIAVCKYKKDEGLIEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFGSRSFVEMEVLESDGGGEHAQAHAHAQAQDGEDLLRGEAEEEVEVCETENVVSEMVAVQPRRSVSLDSSSAAKISLSLATVVSGESHGNNSKRVSGNGNSASKGGCSSSSSSTSSIKRSRSFNAKHLISWYSRSQRKPNAPLRSF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00397 332 CDD RING-H2_EL5-like 126 169 - -
Spst3g00397 332 SUPERFAMILY RING/U-box 118 176 - -
Spst3g00397 332 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 185 IPR044675 -
Spst3g00397 332 Pfam Ring finger domain 126 169 IPR001841 -
Spst3g00397 332 SMART ring_2 127 168 IPR001841 -
Spst3g00397 332 FunFam RING-H2 finger protein ATL54 102 175 - -
Spst3g00397 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Spst3g00397 332 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Spst3g00397 332 MobiDBLite consensus disorder prediction 269 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00397 Spst-Chr3 6872739 6873737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00397 37 205 C3H Transcription Factor Family AT1G72220 48.588 9.89e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00397 - - vun:114177727 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00397 3 6872739 6873737 Spst3g00397 3 6872739 6873737 ECH