Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00377 ATGGCATCCCTTCTTCCATATAACTCACCTGATCCCAGTGATTATGAAGCTAAACCTAACTCATCAACGGTTGAAGCCACTACACTGGAGATAGAAGAAGCATGCAGTGGTCCAAAACCAAAAGGGATCAAAAGAGGAGAAACTTTAGGTTGGAATAACGAGAGAGAAGAGGTGGGTATGTGCTTGACATGGAAGGATGTATGGGTGACTGCTTCTGTGGGAAAGAGTGGAAGCAAATCGATTCTGCAGGGCCTGACTGGTTATGCCAAGCCAGGGCAGCTCTTGGCCATAATGGGTCCTTCTGGTTGTGGAAAGTCCACACTTCTTGATGCCTTAGCTGGGAGATTAGGTTCCAACACAAGTCAAACAGGGGAGATTCTTATCAACGGGAAGAAACAAGCACTGGCATATGGAACCTCAGCATATGTCACACAGGATGATACCTTATTGACAACCTTAACGGTTGGAGAAGCAGTGCACTATTCAGCTCAGCTCCAATTACCTGACGCCATGTCCAAAGAAGAGAAGAAAGAGAGAGCAAACTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATGGGGTGTCAAAGGAATAAGTGGGGGTCAGAAAAGGAGAGTGAGCATTTGCATTGAGATTCTAACACGACCAGGGCTTCTCTTCCTTGATGAACCAACTAGTGGACTTGACAGTGCAGCTTCATATTATGTCATGAAAAGAATCGCTACCCTTGATAAAAGAGATGACATTCACAGAACTGTTATTGTCTCAATCCATCAACCTAGTACTGAAGTTTTTCAAATTTTCCACAACCTTTGTCTTCTATCTTCAGGTAGAACTGTTTACTTTGGACCTGCTTCTGCTGCAAGTGAGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTTCTCTCATGAATCCATCAGATCATTTACTGAAAACCATAAACAAGGATTTCGATCAGGACATTGAGTTGACTTTAGGAGGGAATGCAACAATAATACCCACCAAAGAAGTGATTCGGATCCTAGTAAATTCGTACAATTCATCTGAAATGAACCAAGAAGTTCAGAAGGAAGTAGCAGAACTAACTGAAAAGGACACCGGTTCCACAAACAAGAAGAGAAGGCATGCTGGATTCCTTAATCAGTGTTTTGCTCTTACCAAAAGATCCTCCATTAACATGTTTCGTGATCTAGGCTATTATTGGTTACGCCTTGCCATATATGTTGCATTGGCTATAAGTCTAGCCACTATTTTCTATGATCTGGGTACAAGTCAGCGCTCAATTCAGGATAGAGGTTCATTTCTTATGTTTGTATCTTCATTCATCACTTTCATGACCATTGGCGGATTTCCTTCCTTTGTGGAGGATATGAAGGTGTTTGAACTTGAGAGACTAAATGGACATTACAGTGTCACTGCATTTGTGATTGGGCACAGCTTTTCATCTATACCATTCTTGTTCTTGGTTTCAATCATTCCTGGATCTATAGCCTATTACCTTCCTGGTCTGCAGAAAGACTTTGAGCACTTTGCATACTTCATATGTGTTCTCTTTTCTTGTCTGATGTTGGTAGAGAGCCTTATGATGATTGTTGCAAGCATTGTCCCTAACTTTCTAATGGGCATCATAACCGGTGCTGGAATTCAAGGAATGATGATTTTGGGTGGTGGGTTCTTCCGATTACCAAACGATCTTCCTAGGCCATTTTGGAAATACCCAATGTTCTATGTTGCCTTCCATAGATATGCCTACCAAGGATTGTTCAAAAACGAGTTTGAAGGACTAAGATTCGCTGCAAATAATGTTGAAGATGGCTCCTACGTTACTGGTGAAGAGATTCTAAACAATACATGGCAAGTAAACATGAGTTACTCAAAGTGGGTTGATCTTGGAATCTTGCTGGGGATGATTATTCTGTATCGAATTCTCTTTCTGGTTAACATCAAAACTACTGAGAAGCTGAAGCCAATCATTGTATCATTCATCTCATCAAGGAATTCTCCCAAGCGAACAGTACAGATCATGCAGAATCCCAATGCCACTCCTTTGCAAGAAGTTCAAGCTGTCTAA 2091 0.4146 MASLLPYNSPDPSDYEAKPNSSTVEATTLEIEEACSGPKPKGIKRGETLGWNNEREEVGMCLTWKDVWVTASVGKSGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTSQTGEILINGKKQALAYGTSAYVTQDDTLLTTLTVGEAVHYSAQLQLPDAMSKEEKKERANFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPGLLFLDEPTSGLDSAASYYVMKRIATLDKRDDIHRTVIVSIHQPSTEVFQIFHNLCLLSSGRTVYFGPASAASEFFASNGFPCPSLMNPSDHLLKTINKDFDQDIELTLGGNATIIPTKEVIRILVNSYNSSEMNQEVQKEVAELTEKDTGSTNKKRRHAGFLNQCFALTKRSSINMFRDLGYYWLRLAIYVALAISLATIFYDLGTSQRSIQDRGSFLMFVSSFITFMTIGGFPSFVEDMKVFELERLNGHYSVTAFVIGHSFSSIPFLFLVSIIPGSIAYYLPGLQKDFEHFAYFICVLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGMMILGGGFFRLPNDLPRPFWKYPMFYVAFHRYAYQGLFKNEFEGLRFAANNVEDGSYVTGEEILNNTWQVNMSYSKWVDLGILLGMIILYRILFLVNIKTTEKLKPIIVSFISSRNSPKRTVQIMQNPNATPLQEVQAV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00377 696 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524|GO:0016887
Spst3g00377 696 Gene3D - 62 300 IPR027417 -
Spst3g00377 696 Pfam ABC-2 type transporter 265 380 IPR043926 GO:0140359
Spst3g00377 696 Pfam ABC transporter 83 233 IPR003439 GO:0005524
Spst3g00377 696 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g00377 696 FunFam ABC transporter G family member 11 60 351 - -
Spst3g00377 696 Pfam ABC-2 type transporter 388 599 IPR013525 GO:0016020|GO:0140359
Spst3g00377 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 297 IPR027417 -
Spst3g00377 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 308 IPR003439 GO:0005524
Spst3g00377 696 SMART AAA_5 91 280 IPR003593 GO:0016887
Spst3g00377 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 54 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00377 Spst-Chr3 6599187 6603414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00377 81 293 Calmodulin-binding Proteins AT2G36910 29.680 1.41e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00377 K05681 - gmx:100813462 1188.33