Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00376 ATGGAAAACGACGACGTTGAAATGCTTGGTGCAGATAGCAACGAAGCTGGCTTGGAGTTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTTCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTGCAAGTTCCTGCTACTGCTGCTGCAAGTCAGAACAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTCGGCAATGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGACAAGTTTGGCCAACCAAAAGGCTATGCTTACGTAGAGTTTCTTGAAGTAGAGGCTGTCCATGAAGCTCTTTTGCTGAATGAATCTGAACTGCACGGACGTCAATTGAAGGTTACTGCTAAGAGGACCAACGTACCAGGAATGAAGCAATTTCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCATATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGGAAAGTTCCAAGGTTTAGAATGGGGATGCGCTATAGCCCCTACTATTGA 597 0.474 MENDDVEMLGADSNEAGLELDDMKKRLKEMEDEASALREMQAKVEKEMGSVQVPATAAASQNNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVHEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00376 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Spst3g00376 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Spst3g00376 198 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
Spst3g00376 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Spst3g00376 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 160 - -
Spst3g00376 198 CDD RRM_II_PABPs 71 142 - -
Spst3g00376 198 MobiDBLite consensus disorder prediction 45 64 - -
Spst3g00376 198 Gene3D - 12 143 IPR012677 -
Spst3g00376 198 Coils Coil 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00376 Spst-Chr3 6573404 6578132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00376 71 197 Eukaryotic Initiation Factors Gene Family AT2G36660 26.357 4.35e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00376 K14396 - mnt:21400190 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00376 3 6573404 6578132 Spst6g01684 6 16085519 16090220 PCT