Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00359 ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATCTCCGACACATACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACAGCGGATGATCTATTCCCTCTCTTCGACAAGTACGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAGTCGAGGGGTTTTGCGTTTGTGCGTTACAAGTATGCTGATGAGGCGCAGAAGGCCGTTGATAGACTGGACGGAAGAATGGTTGATGGCCGTGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACAGCCCAGAGATCACGTTACCGGTCAAGAAGCCGTAGTCCCAGGAAAAGATATCGTGATGATCACAGAGACCGTGATTATAGGAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAAGAACCGAGGGAGAGACAGAGATTATCGTCACAGAAGCAGGAGCCGCAGTACCAGTCTTGATTACAAGGGTCGTGGGAGGGGACGCTATGATGATGAGCGCCACAGTAGAAGCCAGAGCAGATCAGTTGATAGCCGCACCCCGGCACGACGCAGTCCTAGTCCTCGGAAGAGTGCTTCCCCCCAGAGGAGTGCTTCCCCTCGAAGGAGTATTTCCCCTAGAAAAAGCCCACGGGGTGAAAGTCCAGCTAATCGTAGCCGTGATGGTCGTTCTCCTACCCCATGCAGTGTCTCACCACGCGGTCGCCCTGAAGCTTCGCGAAGCCCTTCCCCTCGAAATTCAAATGGTGATGCGCATCTTGACTTTGTTGCTGTTGATGCTGTTTCTATGTCATTGATGATTGGTCGTGAATTTGATGCTGGTTGCAAGAGTATGCTGCTGACTGTTGCTGCCCTCTTTGCTGAGATCGGGTTGGCAATGAGTATTGAAGAGGTGTTATGCTGGCTGCCAAAGTTCGCAGAACCGATGAAACACTTTTCTCAATCTAAGTAA 1002 0.506 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRYRSRSRSPRKRYRDDHRDRDYRKRSRSRSYDRYERDKNRGRDRDYRHRSRSRSTSLDYKGRGRGRYDDERHSRSQSRSVDSRTPARRSPSPRKSASPQRSASPRRSISPRKSPRGESPANRSRDGRSPTPCSVSPRGRPEASRSPSPRNSNGDAHLDFVAVDAVSMSLMIGREFDAGCKSMLLTVAALFAEIGLAMSIEEVLCWLPKFAEPMKHFSQSK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00359 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Spst3g00359 333 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 261 - -
Spst3g00359 333 MobiDBLite consensus disorder prediction 125 191 - -
Spst3g00359 333 MobiDBLite consensus disorder prediction 102 268 - -
Spst3g00359 333 SMART rrm2_1 17 90 IPR003954 GO:0003676
Spst3g00359 333 CDD RRM_SRSF2_SRSF8 18 90 - -
Spst3g00359 333 SMART rrm1_1 17 90 IPR000504 GO:0003723
Spst3g00359 333 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Spst3g00359 333 MobiDBLite consensus disorder prediction 192 221 - -
Spst3g00359 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Spst3g00359 333 Gene3D - 4 103 IPR012677 -
Spst3g00359 333 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00359 Spst-Chr3 6333687 6337863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00359 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 3.56e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00359 K12891 - gmx:100778928 378.637