Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00343 ATGGATGTTTTGTCCTTAAGCTCAAGTTCAAGCCTAAGCATGTGCAAACCCTTTCAATCTCATGGCCTTCCACTCTCTAAACAGCAAAGAGTTTCTAATGTGAAGTTTGGTGCAGTTTCATGCAGAGTCACAACCCAAGAAAACTTGTACAAAGTACTGTCAGTGAGTCCAGGAAATGCAACAATGGATGAGATTAAGAGGGCTTATAGATCCATGGCTCTTCAGTACCACCCTGATGTGTGCCACGATCCCTCCATGAAAGAGGAGTCTACGAGGATGTTTGTGGAGTTAAATGCTGCTTACAAGACCTTGTCCAATCCAAGGCTCCGAGAACAGTACGACACTGAATTGGGTCAGAGAAGCAAAGTCATGAGTGTTGGTGTTGATCATGAGAGATGGAGGGGAAGTAAGTTGCAGGAGGAAATGATTGAGGTGAAGACAAGGTCTCGAAGACGAATGGCACAAAAGAGAGGAATATCGGGTACCAGAATGAGATCACAAAACATGAAAGACAGACATTGA 522 0.4406 MDVLSLSSSSSLSMCKPFQSHGLPLSKQQRVSNVKFGAVSCRVTTQENLYKVLSVSPGNATMDEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVELNAAYKTLSNPRLREQYDTELGQRSKVMSVGVDHERWRGSKLQEEMIEVKTRSRRRMAQKRGISGTRMRSQNMKDRH 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00343 173 Pfam DnaJ domain 48 114 IPR001623 -
Spst3g00343 173 ProSiteProfiles dnaJ domain profile. 48 117 IPR001623 -
Spst3g00343 173 Gene3D DnaJ domain 35 138 IPR036869 -
Spst3g00343 173 PRINTS DnaJ domain signature 51 69 IPR001623 -
Spst3g00343 173 PRINTS DnaJ domain signature 89 109 IPR001623 -
Spst3g00343 173 PRINTS DnaJ domain signature 69 84 IPR001623 -
Spst3g00343 173 CDD DnaJ 48 106 IPR001623 -
Spst3g00343 173 MobiDBLite consensus disorder prediction 146 173 - -
Spst3g00343 173 SUPERFAMILY Chaperone J-domain 44 113 IPR036869 -
Spst3g00343 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 35 171 - -
Spst3g00343 173 FunFam Chaperone protein dnaJ 20, chloroplastic 36 138 - -
Spst3g00343 173 SMART dnaj_3 47 109 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00343 Spst-Chr3 6142882 6143403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00343 50 124 C2H2 Transcription Factor Family AT1G74250 40.260 6.20e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00343 - - gmx:100811478 264.618