Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00340 ATGAAGCTAGCGATTTCATCTTTCAGGTGTTTGTTTCTTCTTTGGGCATTTTTGGTGCTTGACTTGGTGCTCAAGGTTTCTGGCAACCAAGAAGGTGCAGCCCTGGCTGCATTGAAGAGCAGTGTGGCTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACGTGGTTTCATGTTACTTGCAACAATGAAAATAACGTGATCCGTGTTGATCTTGGAAATGCAAACCTTTCTGGTCAACTGGTTCCACAGCTTGGTCAACTCCCAAGTTTGCAATACCTGGAACTCTATAGTAATAATATAACTGGGAAAATCCCAATTGAGCTTGGAAGTTTGAAAAACTTGGTGAGCTTGGATCTTTACTCTAACAAGATTACTGGTTACATTCCAGACGAATTGGCCAACCTTGAAAATCTAAAATTCCTGCGTCTCAATAATAACAGCTTGTCAGGAAAAATTCCTATGCGTTTAACCATAGTTGATACTCTGCAAGTGCTTGATTTATCGAACAACAACTTAAGAGGAGATGTCCCAACCAATGGTTCTTTTCAAGCTTTTACTCCCATCAGTTTTAGGAGTAACCCCCTATTGAAAAATATAAGCATTGTACCTCCACCAGCTGCCGCACCAACACAAGGACCTCCAGGTGCATGTGCTCATGATCTTATGCTGACTCAGCAGAGGGAGAAACCTGGAGTTTTGCAGAGTAATGATAAACGTTCTGTTGGAGCCATTGCTGGAGTAGTTGCTGTGGCTGCTGCAATATTGTTTGCAGCCCCTGTAGTTGCACTTGTTTATTGTAAAAGAAGGAAACCACGGGATTTTTTCTTTGATGTTGCAGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCACTACGCGAACTGCAAGTTGCAACGGATAACTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAGAGGGCGGTTAACAAATGGAGATCTTGTAGCAGTAAAAAGACTCAAAGAGGAACGCACCCAGGGTGGGGAGATGCAGTTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGGACGGTTTTTGTATGACACCTACTGAACGTTTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCTTCATGCTTACGAGATCGTCCGGAAGCACAGCCACCTCTTGAATGGGCAAAACGGAAGCGAATTGCTCTGGGAGCTGCCAAAGGGCTTGCTTATCTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGGATTACAAAGATACTCATGTTACTACTGCGGTACGGGGTACAATTGGCCATATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAAATAATAACTGGACAGAGGGCTTTTGATTTAGCACGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGTACTTCTGAAAGACAAGAGGTTGGAGACACTGGTGGATGCAGATTTGGAGGGAAATTATGAAGAGCAGGAAGTAGAGGAGTTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTTCGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGATAAATGGTGGCAGAAAGAGGATATGATCCAACAAAATTTTGACTCCTCCAATCTCCACCATGCTTATTGGCCATTATTAGACTCAACGTCAAATATTCCCCCAGATGAACTGTCAGGGCCTAGATAA 1917 0.4293 MKLAISSFRCLFLLWAFLVLDLVLKVSGNQEGAALAALKSSVADPNNVLQSWDSTLVNPCTWFHVTCNNENNVIRVDLGNANLSGQLVPQLGQLPSLQYLELYSNNITGKIPIELGSLKNLVSLDLYSNKITGYIPDELANLENLKFLRLNNNSLSGKIPMRLTIVDTLQVLDLSNNNLRGDVPTNGSFQAFTPISFRSNPLLKNISIVPPPAAAPTQGPPGACAHDLMLTQQREKPGVLQSNDKRSVGAIAGVVAVAAAILFAAPVVALVYCKRRKPRDFFFDVAAEEDPEVHLGQLKRFSLRELQVATDNFNNKNILGRGGFGKVYRGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLDGFCMTPTERLLVYPFMANGSVASCLRDRPEAQPPLEWAKRKRIALGAAKGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFDLARLANDDDVMLLDWVKVLLKDKRLETLVDADLEGNYEEQEVEELIQVALLCTQSSPSERPKMSEVVRMLEGEGLAEKWDKWWQKEDMIQQNFDSSNLHHAYWPLLDSTSNIPPDELSGPR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00340 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Spst3g00340 638 Pfam Protein kinase domain 314 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00340 638 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Spst3g00340 638 SMART serkin_6 313 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00340 638 Gene3D Transferase(Phosphotransferase) domain 1 390 608 - -
Spst3g00340 638 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515
Spst3g00340 638 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Spst3g00340 638 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Spst3g00340 638 FunFam Somatic embryogenesis receptor kinase 1 282 389 - -
Spst3g00340 638 SUPERFAMILY Protein kinase-like (PK-like) 293 588 IPR011009 -
Spst3g00340 638 SUPERFAMILY L domain-like 30 200 - -
Spst3g00340 638 FunFam Somatic embryogenesis receptor-like kinase 1 390 608 - -
Spst3g00340 638 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Spst3g00340 638 FunFam Somatic embryogenesis receptor kinase 1 27 218 - -
Spst3g00340 638 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Spst3g00340 638 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00340 638 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00340 Spst-Chr3 6099558 6105134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00340 10 638 Receptor kinase-like Gene Family AT4G33430 68.879 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst3g00340 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00340 K13416 - gmx:100804180 1009.21