Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00339 ATGGGGCAAGATGATCTGGTAGGGTTCTATACCAAAATCCTAGTGTTTGGTTGTAAACTGAAAAAGTTTGGATGTTATGCTTGGGGAGTTCTTGAGGAACCTGAGCTTCATGTTGTTACTTTCTTTGATGCCCTATATGCACTGAAGAGCAATATGATAGATCCTAATGATGCTCTTCATAGTTGGGATCCTTCTATTACAAATCCTTGCACATGGTTTCATATTTCTTGCAACGGTGAAAGTAGCGTGACCCGTGTGGATCTGGGAAATGAAAACCTTTCGGGTCAACTTGTTCCACAGCTTGGTCAGCTCCCAAATTTGGAATATTTGGAACTGTATAGCAATAACATAACAGGGAAAATCCCAGTTGAGCTTGGAAAGTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTATTGGTCCAATTCCAGATGAATTATCCAACCTTAAAAAACTACAGTTCTTAATTAGATCTGTTGGAGTCATTGCTGGAGGAGTTGCTGTGGGTGCTGCCCTGTTGTTTGCAACTCCAGTAATTGCATTTATTTACTGGCAAAGAAGGAAGCCGCCAGATTATTTTTTTGATGTTGCAGCCGAGGAGGATCCTGTAGTTAGCTTTGGTCAGCTTAAAAGGTTTTCACTACATGAACTACGAGTTGCAACAGATGGCTTTAATAACAAAAACCTTCTTGGTAAAGGTGGCTTTGGCAAGGTTTACAAAGGACGTTTAACAAATGGTGATCTTGTAGCGGTAAAAAGACTTAACCAAGAACGCATCCAGAGTGAGGAGAAGCAGTTTCAAACAGAAGTGGAACTGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGAGCGACCAGAATCACAACCACCACTTGAATGGCCAGCTCGGAAGCATATTGCTCTAGGAGCAGCTAAGGCACTTGCTTATCTGCATGATCATTGTATCCCAAAGATTATTCATCGTGATATCAAAGCTGCTAATGTGTTATTAGATGAGGACTATGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAAATACTCATGTTACTACTGCCGTACGTGGGACACTTGGCCATATAGCACCAGAGTATCTGTCAACTGGAAGGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTTAATTTAGCACGGCTTGCCGTTAATGATGAGGTCATGTTGCTTGAATGGGTGAAAGGACTTTTGAAAGAGAGGAAGTTGGAGACACTGGTGGATGCAGATTTACAGGGAAATTATGATGAGGAGGAAGTAAAGGAGGTAATCCAATTGGCCTTGCTATGCACACAAAGCTCAGCTTTGGATAGACCAAAAATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGAAGAAAAGTGGGATCAATGGTGGATGAAGGAGGATATGATTCAAAAGAATTACAACCCCTTCAATGTTTACATTGCTTATGACTCAACTTCAAATATTCCACCAGATGAACTGCAAGAGCTTGCGTTGACTCAAGTGTGA 1659 0.4105 MGQDDLVGFYTKILVFGCKLKKFGCYAWGVLEEPELHVVTFFDALYALKSNMIDPNDALHSWDPSITNPCTWFHISCNGESSVTRVDLGNENLSGQLVPQLGQLPNLEYLELYSNNITGKIPVELGKLTNLLSLDLYSNNIIGPIPDELSNLKKLQFLIRSVGVIAGGVAVGAALLFATPVIAFIYWQRRKPPDYFFDVAAEEDPVVSFGQLKRFSLHELRVATDGFNNKNLLGKGGFGKVYKGRLTNGDLVAVKRLNQERIQSEEKQFQTEVELISMAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVDSCLRERPESQPPLEWPARKHIALGAAKALAYLHDHCIPKIIHRDIKAANVLLDEDYEAVVGDFGLAKLMDYKNTHVTTAVRGTLGHIAPEYLSTGRSSEKTDVFGYGVMLLEIITGQRAFNLARLAVNDEVMLLEWVKGLLKERKLETLVDADLQGNYDEEEVKEVIQLALLCTQSSALDRPKMSEVVRMLEGEGLEEKWDQWWMKEDMIQKNYNPFNVYIAYDSTSNIPPDELQELALTQV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00339 552 FunFam Somatic embryogenesis receptor-like kinase 1 304 521 - -
Spst3g00339 552 FunFam Somatic embryogenesis receptor kinase 1 196 303 - -
Spst3g00339 552 SMART serkin_6 227 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00339 552 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Spst3g00339 552 SUPERFAMILY Protein kinase-like (PK-like) 206 502 IPR011009 -
Spst3g00339 552 Pfam Leucine Rich repeats (2 copies) 105 150 IPR025875 -
Spst3g00339 552 Pfam Leucine rich repeat N-terminal domain 43 78 IPR013210 -
Spst3g00339 552 Gene3D Ribonuclease Inhibitor 42 165 IPR032675 -
Spst3g00339 552 ProSiteProfiles Protein kinase domain profile. 227 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00339 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Spst3g00339 552 SUPERFAMILY L domain-like 41 161 - -
Spst3g00339 552 FunFam Somatic embryogenesis receptor kinase 1 38 177 - -
Spst3g00339 552 Gene3D Phosphorylase Kinase; domain 1 196 303 - -
Spst3g00339 552 Gene3D Transferase(Phosphotransferase) domain 1 304 521 - -
Spst3g00339 552 Pfam Protein kinase domain 228 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00339 552 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 42 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00339 Spst-Chr3 6092981 6098874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00339 86 539 Receptor kinase-like Gene Family AT4G33430 65.517 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst3g00339 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00339 K13416 - gmx:100804180 694.115