Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00331 ATGGCCGATAATAATGTCAACCTCCCACCCGGCTTTCACTTTTATCCCACAGATGAAGAGCTTGTCGTCCATTTCCTTCAAAGAAAGGCAAATCTTCTACCCTGCCATCCAGATGTCATTCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATGTGGGAGAAGCCCCTGATGGTAACATCACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCAGATCATCCAGAAGAAGATCACAACCAAAACCGGACCATAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATGATGATGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATAAGTTTGCCAAATTAG 576 0.4306 MADNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDGNITNWIMQEYRLLDSASSSRSSRRRSQPKPDHSKWVICRVYERDNDDDDDGDGTELSCLDEVFLSLDDLEEISLPN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00331 191 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Spst3g00331 191 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Spst3g00331 191 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Spst3g00331 191 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Spst3g00331 191 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Spst3g00331 191 FunFam NAC domain-containing protein 104 17 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00331 Spst-Chr3 5997687 5998665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00331 6 160 NAC Transcription Factor Family AT1G52890 44.172 3.96e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g00331 NAM 6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00331 - - gmx:100813096 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00331 3 5997687 5998665 Spst3g00331 3 5997687 5998665 ECH
Spst3g00331 3 5997687 5998665 Spst6g01730 6 16521106 16522268 PCT