Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00325 ATGAAGTACTTGTGTTTCTCAAACATTTCTTTCATCTCCCCTTTCCGCTTCGGCTCTGTTAGGTTTTCCTTCCGCGTGTTTGCCGGAACTACTCCTCCACTCATCGAAGCTGGATATGGTCATGGGTTTAGTCAATTTTGTTTTAAAATGTCTGACGTGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCTTGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTTGGCAAACTTGTTGAGGCAAAGGTTGTTGTTGACAAGTTTTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACAGTTGATAGAGCCCAGCCTCAACAAGGATCAGCTAGAGATGATGGTGATCGCTACCGGGAGCGAGGTCGTGAACGGAACCGAGATTATGGAGGTGGAGGTGGCCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGAAAGTATGGTGGAAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGGGGCCGCAACAGGGATGGTGGTAGTCATGGAGATTCTGGAAATGATCGACATTATCGTGATCGTGCAGGACCGTATGAGCGAGAGCGACGGGGATCGGGAGGCTTTCGTTGA 771 0.4682 MKYLCFSNISFISPFRFGSVRFSFRVFAGTTPPLIEAGYGHGFSQFCFKMSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSARDDGDRYRERGRERNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGKYGGRESRYGGSSGGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRHYRDRAGPYERERRGSGGFR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00325 256 Gene3D - 166 224 - -
Spst3g00325 256 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Spst3g00325 256 Gene3D - 49 165 IPR012677 -
Spst3g00325 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 128 IPR000504 GO:0003723
Spst3g00325 256 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 50 250 - -
Spst3g00325 256 SUPERFAMILY RNA-binding domain, RBD 44 164 IPR035979 GO:0003676
Spst3g00325 256 CDD RRM2_NsCP33_like 57 132 - -
Spst3g00325 256 MobiDBLite consensus disorder prediction 137 158 - -
Spst3g00325 256 ProSiteProfiles Zinc finger CCHC-type profile. 170 184 IPR001878 GO:0003676|GO:0008270
Spst3g00325 256 SMART rrm1_1 57 130 IPR000504 GO:0003723
Spst3g00325 256 SUPERFAMILY Retrovirus zinc finger-like domains 152 189 IPR036875 GO:0003676|GO:0008270
Spst3g00325 256 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Spst3g00325 256 MobiDBLite consensus disorder prediction 125 256 - -
Spst3g00325 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Spst3g00325 256 FunFam Glycine-rich RNA-binding protein 10 166 224 - -
Spst3g00325 256 MobiDBLite consensus disorder prediction 215 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00325 Spst-Chr3 5953089 5954999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00325 58 152 Eukaryotic Initiation Factors Gene Family AT4G34110 33.684 3.54e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00325 - - gmx:100815224 292.737