Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00319 ATGGTTGGAAGTGTTGATGTTTTAGCTTGTGATTTCAGCATTAATGGAACAATGAAACCGTTGCCTGAGAATTTCAATTCCACGGCGTTTATAACAAATCATGTGCCACTCGTAGTTGGAGAGAATGGCATTGGCAAGGGAGAGGCTCAGAACGGTATAGAAAATGGGGAGAGAAAGATTGTCCTGGGAAGAAATATTCATACCATGTGCCTTGAAGTCACAGAGCCTGATATAGATGATGAGATTACTGGTGAAAGGGAAGCTTATATGGCAAGTGTCTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGTTACCCCTATAATTTGAATTTTGACTATGATGCACTTTCTCAACTTCAGCACTTTTCCATCAACAACTTGGGAGATCCGTTTATTGAAAGCAATTATGGTGTACACTCCAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTTGCGCGGTTGTGGGAATTGGAGAAAGATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTTCATGGAATCCTTGTTGGGAGAGAGGTTTTCCCAGATGGAATTTTATATGCCTCACAGGAGTCCCATTATTCTGTTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAGATTGACACTCATTGTTCTGGTGAGATTGATTGTGATGATTTCCTGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCGATTGTGAATGTGAACATAGGTACAACTGTGAAAGGAGCCGTGGATGACCTTGATCTTGTCATAAAGAAACTTGAGGAAGCAGGATTTTCACATGACAGGTTCTACATCCATTGTGATGGAGCTCTGTTTGGTCTCATGTTGCCTTTTGTCAAACGTGCTCCAAAAGTTTCATTCAAGAAGCCCATAGGCAGTGTGAGTGTTTCTGGGCACAAGTTCGTGGGGTGCCCGATGCCCTGTGGCGTGCAGATAACGCGATTGAAGCATTTGAAAGCTCTGTCGAGGAACGTAGAGTATCTTTCTTCAAGGGACGCGACGATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGTCTAAACATGAAAGGGTACAGGGGTTTTCAGAAGGAGGTGCACAAGTGCCTGCGCAATGCACACTACTTGAAAGGTCGCCTTGTGGACGCCGGCATAGGAGCAATGCTGAACGAGCTGAGCAGCACCGTGGTGTTCGAGAGACCACATGATGAGGAGTTCGTGCACAAGTGGCAGTTGGCATGCCAAGGGAACATTGCTCATGTGGTGGTGATGCCAAGTGTCACCATCGAGAAGCTTGATGATTTTCTGAATGAACTCGTGCAGAAGCGTCAAGTGTGGTTCCGAGATGGCAAGTCTCAACCTTATTGTATAGCCTCTGCTGTGGGACAGAAAAATTGTCTCTGTGCTATCCACAGGTGA 1458 0.454 MVGSVDVLACDFSINGTMKPLPENFNSTAFITNHVPLVVGENGIGKGEAQNGIENGERKIVLGRNIHTMCLEVTEPDIDDEITGEREAYMASVLAKYKKSLTERTNYHLGYPYNLNFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKIDTHCSGEIDCDDFLAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLKHLKALSRNVEYLSSRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVHKCLRNAHYLKGRLVDAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGNIAHVVVMPSVTIEKLDDFLNELVQKRQVWFRDGKSQPYCIASAVGQKNCLCAIHR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00319 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 402 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst3g00319 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Spst3g00319 485 Gene3D - 142 356 IPR015421 GO:0003824
Spst3g00319 485 FunFam Serine decarboxylase 1 124 367 - -
Spst3g00319 485 PANTHER - 52 485 - -
Spst3g00319 485 Gene3D Aspartate Aminotransferase, domain 1 361 457 IPR015422 GO:0003824
Spst3g00319 485 SUPERFAMILY PLP-dependent transferases 99 455 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00319 Spst-Chr3 5832914 5835328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00319 251 390 Calmodulin-binding Proteins AT1G65960 28.188 9.69e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00319 K25193 - gmx:100792053 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00319 3 5832914 5835328 Spst6g01737 6 16554558 16559370 PCT