Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00306 GGTGCAGGGCAGGCAGTGGCACTCAGAGTAATAGCAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGTGTGGCAGTACTGCACTCTTGGAACATTGTCACATCCATTGCAAATCCGCGGGGTTTATAACCGCACTGAGAGCGAAACTCTCCACAGGAAAAAGCTGGTTATGTATTCCCGAGGTAATGGGGGAACTTCATATGCATATCCGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTTTTTGCATTCACTTTCATGGATCAATGTATAAAGCCTACGAGGTGGAATAATTGGGGCAAAGTTGAGAATGAAAGAACTTCTTGCTTCTATGAATACGAGCAATCATTTCTAACTCCATTCCGTAGTATT 375 0.4427 GAGQAVALRVIADRCAFYNCRFLVWQYCTLGTLSHPLQIRGVYNRTESETLHRKKLVMYSRGNGGTSYAYPGRPWRPFARVVFAFTFMDQCIKPTRWNNWGKVENERTSCFYEYEQSFLTPFRSI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00306 125 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 117 - -
Spst3g00306 125 Gene3D - 1 45 IPR012334 -
Spst3g00306 125 Gene3D - 51 120 IPR012334 -
Spst3g00306 125 SUPERFAMILY Pectin lyase-like 3 116 IPR011050 -
Spst3g00306 125 Pfam Pectinesterase 66 115 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00306 Spst-Chr3 5385914 5387282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00306 64 117 Carbohydrate Esterase AT1G05310 42.593 3.96e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00306 K01051 - gmx:100810259 138.272