Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00303 ATGGGAGAAATTTCTTCTGAGATGGAGATGGCTCTGAGTCAACTCAGAACTCTTACTGTCCTTGTCATTGACAGTAACCCCATGGATCTTGAATGCATCAAGAAAACATGCAACCAATGTTCTAATCACGTTATAGCAGTCGCTGAATCTCTACTTGCTCCGAATCTTTTGCGGAACATCAAAGGACGTATTGACTTGGTACTCATGGAGGTTCATATGCCATTGATAGATGGCTATGAATTCCTACAATTTGTCAAACAGGAGATTAATGTTCCTCTCGTCTTGATGTCTTCGGATGATAATAAGAATTCTGTAACGAAGGCTATCGAACTTGGAGCATTTGATTATTTGATTAAGCCTTTGCGCGAGGATCAGTTGAATCAACTATGGAGATATGTTGTTATGAAGTCCGTAAGTGAAGAAAATACGAAAGTAAAAGATAATGACTGCTTGGAAGATGATAATAAAAAAAGAGGGATGAAAGTGAATTCTCAATTTGCACCTTCTCCTGATATTGAAAGGATCAATTGCAGTTCCAGGCAAGTTGATGTTGTTGATAAATCAAAGAATAGTGATTCACCAAACAGGAAGACCCGTGTAGTATGGTCATCAGACCTGCATAATCGATTTCTCAATGCTATCCACGAACTTGGACTTGCTACTTTACTTTTGGTCCTTAACTTCTATCTTTCAGATGCTGTGCCAAAGAAAATTCTTGCACTCATGAATGTCCCTGGTTTGCAAAGAGGACATGTCGGTAGTCATTTGCAGAAATACAGAAAAGCTTTGGAGACTAAATCTAAAAATGTTGCACAGAGACAGCAGCAACAGAATGAGAGAAAATCATTGATTTTAAGGAATACAGCGGGTAGGATGGGTGCATCTGGAAGAACCCACTTGCAACCTTTCCCTGCTACTACACTGTCAGATTTTCATCCTGGTCTCACAGGTAACATGGTACCAATAAGAGAGGACCAATCTCATCAAAATATACAATTGGCCAACCATTTTAATGGGGAACAAGCTTTAGCACATGGTCATTCTCTTTCAAGCTTTCATGACATAGTCAATCCCCAGAATTCTTCACCTGACACAGTGTTAGTTGAAAATCAGGCTATGCTTCAGAGCACGGGGATTCTAGATGATGCATTTAGATATACATCTCGGTCTCCACCAAACACAGTGCCAGTTGAAAATCAGACTATGTTTAAGAGTATGGGGACTTCAGATGATGCATCGAGATATAGTTCTTTGTCTTCACCTAATCCAGTGTTATTTGAAAACCAGGCTATGCTTCAGAGAAACAATATGCAACAGGGAAGGATGGAACAGTCAATGATGCAACATCATCAAATTCATCCAATCAACTTTCAGTCACCTTCCATGATGATTTCTGGAAATTCTGTCACCCAGAATAACAGTTTTGGCATGAACATTGATCATGATTTAATATCACCTCAACCCAGTAGAAATTCAGTCGGTATTGTTCAAATCCAAGGTGGAAATAACACGGGTGAAGTCATACTCACAGGAACTTCTTCTTTCCCACAATTTCAAAATACAGGTTTGTCAAGTGCTTCTGTGGGACCTTTTGCTGCATCAATGTTTGATACACAAGTTCCCTATGTTTCTAGACCTAACACTTTTGGAGTTGGAGTTGATGAAATAGATATGTTCGATCCAACTGAGTATGGGGAGCTTGCGTTTGGATCATCTGCAAGTGATTTTCGTAATCAAAATATTGATTATCAAACAAACAATCAAGGAGCAGCTTAA 1776 0.3919 MGEISSEMEMALSQLRTLTVLVIDSNPMDLECIKKTCNQCSNHVIAVAESLLAPNLLRNIKGRIDLVLMEVHMPLIDGYEFLQFVKQEINVPLVLMSSDDNKNSVTKAIELGAFDYLIKPLREDQLNQLWRYVVMKSVSEENTKVKDNDCLEDDNKKRGMKVNSQFAPSPDIERINCSSRQVDVVDKSKNSDSPNRKTRVVWSSDLHNRFLNAIHELGLATLLLVLNFYLSDAVPKKILALMNVPGLQRGHVGSHLQKYRKALETKSKNVAQRQQQQNERKSLILRNTAGRMGASGRTHLQPFPATTLSDFHPGLTGNMVPIREDQSHQNIQLANHFNGEQALAHGHSLSSFHDIVNPQNSSPDTVLVENQAMLQSTGILDDAFRYTSRSPPNTVPVENQTMFKSMGTSDDASRYSSLSSPNPVLFENQAMLQRNNMQQGRMEQSMMQHHQIHPINFQSPSMMISGNSVTQNNSFGMNIDHDLISPQPSRNSVGIVQIQGGNNTGEVILTGTSSFPQFQNTGLSSASVGPFAASMFDTQVPYVSRPNTFGVGVDEIDMFDPTEYGELAFGSSASDFRNQNIDYQTNNQGAA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00303 591 SUPERFAMILY CheY-like 17 134 IPR011006 -
Spst3g00303 591 SUPERFAMILY Homeodomain-like 196 264 IPR009057 -
Spst3g00303 591 CDD REC_typeB_ARR-like 20 134 - -
Spst3g00303 591 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Spst3g00303 591 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 261 IPR006447 GO:0003677
Spst3g00303 591 Coils Coil 256 276 - -
Spst3g00303 591 SMART REC_2 18 130 IPR001789 GO:0000160
Spst3g00303 591 Gene3D - 9 143 - -
Spst3g00303 591 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 323 IPR045279 GO:0009736
Spst3g00303 591 Gene3D - 194 265 - -
Spst3g00303 591 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Spst3g00303 591 FunFam Two-component response regulator 193 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00303 Spst-Chr3 5335637 5337832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00303 18 316 Response Regulator Gene Family AT4G31920 31.894 6.23e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g00303 Response_reg 5.9e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00303 - K14491 var:108339502 310.842