Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00292 ATGTGCAACAACATCCTTGGCCCAATAATGGACAGCTATCAAGGTGATTTAAGTGACATAATTCGTGCCAGTGGTGCATCGTATGGCAGATGCAGCACGGGAACTTCATCATCTGAAGCTTGTGCTCCCTTCTCTCTTGATCACTGCCTCTTCTCTTCTGTTTTGGAAGGGTTTAATAGCAACTTTGGTGATCCATTCTCGAACATGAGAGATCCATTTCTACATGAGCTTGAATTGCCTTCATGCTCTGCCTACTTTAACAGCACAACAAGTTCTGCGGAAATTGGCAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGCTGGTAACAGTAATAGTTGTGGTTTGAAACCAAAGATTCTTGAGGATGATGACATGAGAAGGCCTTGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATCTCTCCAGTGGTGGATGCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTTAGGTAAAAACATGATTAATTTGAAGACCTCTGAGGATGATTGCTTGGTGGGAAACCGCAACACTGAAGAAGTGCAGATCTCATCTCCACGGAATCCAGGTCTTAAGAGAAGGAAGAGCCAGGCAAAGAAATCCATTTGTGTTCCTGCACCAGCTGCGCCAAACAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCAAGAAAACAAGTTGAGAGGAGCAGAACTGACCCAAACCTCTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACTCACAGAAATTCTCTCGCTGGTTCTTCTAGATCCCAACCTTCATCCAAGAGCAACAACATTGCTGCTTCAAAGATTTCAGAAACAAGTCCCCAAAACGAGGAAGAGCAGCATGAGGAGAGCAACAGTGACAGCAATAATGTAAATAACAGTGCATGTGTGCATGAAGAAAAGCAGCTTGAGATGGATGATGGAGAATTCAGTGATATTGGTCTCCCTTACAAGTCAATATCTAAGATGAAGAGCTACCAACAACTTGATCAGGGTTTGTTTGCAGAATTGGGAGAAATAGAAAAAGCTCACTCATTAAACCTATTGTCTCCACCGCATGGTTTTGATGATCAACAAAGGGAATCCAACGCTTTAGATTCATTCCATATCTTTGACTGGAGCGGTGATAACAGCGCCAAGTACCACCTCATTTGA 1308 0.4404 MCNNILGPIMDSYQGDLSDIIRASGASYGRCSTGTSSSEACAPFSLDHCLFSSVLEGFNSNFGDPFSNMRDPFLHELELPSCSAYFNSTTSSAEIGSSGALEEATCFGGGVAGNSNSCGLKPKILEDDDMRRPCNSILSNMIQISPNDKLPISPVVDALSRALKPSGVVLGKNMINLKTSEDDCLVGNRNTEEVQISSPRNPGLKRRKSQAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNSLAGSSRSQPSSKSNNIAASKISETSPQNEEEQHEESNSDSNNVNNSACVHEEKQLEMDDGEFSDIGLPYKSISKMKSYQQLDQGLFAELGEIEKAHSLNLLSPPHGFDDQQRESNALDSFHIFDWSGDNSAKYHLI 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00292 435 MobiDBLite consensus disorder prediction 258 343 - -
Spst3g00292 435 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g00292 435 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 397 IPR044810 GO:0003700
Spst3g00292 435 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g00292 435 Gene3D WRKY domain 207 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g00292 435 SUPERFAMILY WRKY DNA-binding domain 231 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g00292 435 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g00292 435 FunFam probable WRKY transcription factor 14 207 287 - -
Spst3g00292 435 MobiDBLite consensus disorder prediction 192 230 - -
Spst3g00292 435 MobiDBLite consensus disorder prediction 277 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00292 Spst-Chr3 5111793 5115165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00292 1 400 WRKY Transcription Factor Family AT2G34830 40.972 2.89e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g00292 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00292 - - vra:106752855 684.1