Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00285 ATGGTGAAAATTTCAGTTGGTGGGTATGATGATGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGGGAAGAGGAGGAGGAAGAAGAAGACCGAAACTCGCAACGAAGCTTTGAAATTGTAGACCGTTCAATTGAACTTCAAAAGCGTGAAGATCGTCCTCCTCCACCCCTTCGTGCTAACGCAAATGGGTCTGCAAGCAATGGCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGATCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCCCCTGTCTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTAATGCCTATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGACTCTATTAAGATGTCATGCCCGAATGCAAATTATGGCTGCACAGAGACATTTTGTTACAGCAAAAAAAACGACCATGAGAAAGAATGCATCTATCTACCATGTTTATGCCCACATACTGGTTGCGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACTTCAGGCACAGACATACAGACTCTGGAACACAGTTTACATATGATAAATTTTTCACAGTCATCTTCAGTGCTGATCAAAAAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCACGAGAATTTGGGACATAGAGTCCGCATTAGTTGCATTGGCCCCAGGTCCATGGCAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATATTGCAATCTTTTTCCAAGATCATTCAAGGCCATTATGCTGATGCTCCTTCAAATGCGTTCCTTTTGATTCCTTCTGGTTTTTTTGGCCCTCTACAACTGAAACTGGATATTCGCATTAAGTCACATTAA 948 0.4283 MVKISVGGYDDGEGPSNRNQKRRREEEEEEEDRNSQRSFEIVDRSIELQKREDRPPPPLRANANGSASNGTRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHTGCDFVASSKELFLHFRHRHTDSGTQFTYDKFFTVIFSADQKTIVLQEKNDGNLFIVHNNHENLGHRVRISCIGPRSMAEFQYEVLARFRGSTLILQSFSKIIQGHYADAPSNAFLLIPSGFFGPLQLKLDIRIKSH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00285 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 33 314 IPR044286 -
Spst3g00285 315 SUPERFAMILY TRAF domain-like 141 312 - -
Spst3g00285 315 ProSiteProfiles Zinc finger RING-type profile. 88 123 IPR001841 -
Spst3g00285 315 ProSiteProfiles Zinc finger SIAH-type profile. 141 199 IPR013010 GO:0008270
Spst3g00285 315 Coils Coil 17 37 - -
Spst3g00285 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 194 IPR013083 -
Spst3g00285 315 MobiDBLite consensus disorder prediction 1 70 - -
Spst3g00285 315 MobiDBLite consensus disorder prediction 15 57 - -
Spst3g00285 315 CDD RING-HC_SIAHs 86 123 - -
Spst3g00285 315 Pfam Seven in absentia protein family 131 279 IPR018121 GO:0005737|GO:0006511|GO:0007275
Spst3g00285 315 SUPERFAMILY RING/U-box 87 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00285 42 312 C3H Transcription Factor Family AT2G41980 27.178 1.72e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00285 K04506 - gmx:100778869 500.745