Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00268 ATGACACCGACCCATGCATTCTTTAACCACGTATCCCTCTTTTTCCACCGTGGATTTCTGCTTCGTAAACATATATATCGTCGTCTCTTCAACAACACCCTTTCTTCTTCCTCAGCTTCTGGATCTGAACTCGGCCAAGAGAAAGTCATGCATCAAACAAACATGGTCAAGGCCAATTCTAACTTGCATAAAAGAAAGTCTAGTGATGGACATTCTTCTGCATTCAAGCAGCCAGAGGATAACATTAGTAGAGACGAAAACTATAATGAGGATGAAGATAACAATGATGTTGGAAAATACATGGATGAAGAAAAAGCAGGAGGAGATTATGATGCAGTGGATGACTATCAAGACAAAGACTTACCAGGAGATGAAGGTCCAACTGCTACAGAGGAGCAACCTCACAAGGGTCTGGTGACAAAATTTGCAGCTGAAAAGAATAAGCCTAGACATTTCATCCATGGATATCACTTAATACAAGGACAGATGAACCATGGAATGGAAGACTATATTTTTGCTAAACACAGGAATCTTGATGGCTACGACTTAGGGTTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCAAAATACTTGCAAAGCCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAATATCCAGTGCAAGCTGTTAAGAAAGCATGCAAAGCGACAGATGATGAGATTTTAGAAAACATAGCTGATTCACGTGGAGGTTCAACAGCTGTTGTAGCAATACTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTCGAGCAATATCATGCAAAAATGGTCTAGCAAAACCACTTACTGTAGATCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGGGGTTTTGTGTCTAAGAGACCCGGGAATGTTCCAAGAGTGGATGGCCAATTAGCAATGACTCGGGCATTTGGAGATGGAAAACTGAAGGAGCACATTACTGCAGAACCAGATGTGACCATTCGGAAGATTGATGAAGACACTGAATTCATCATTTTGGCAAGTGATGGTCTGTGGAAGAACCATGGTCTGCACAAGCAGGTTATGACAAATCAAGAGGCTTGTGACAGTATCAAGAATGCGGATGGTGCGCAGAAAGCATCTAAGAAGTTAGTTAAAGAAGCTAAATCTCTGGGAAGCTACGATGATATTTCATGCATAGTGATAATGTTCTAG 1221 0.4136 MTPTHAFFNHVSLFFHRGFLLRKHIYRRLFNNTLSSSSASGSELGQEKVMHQTNMVKANSNLHKRKSSDGHSSAFKQPEDNISRDENYNEDEDNNDVGKYMDEEKAGGDYDAVDDYQDKDLPGDEGPTATEEQPHKGLVTKFAAEKNKPRHFIHGYHLIQGQMNHGMEDYIFAKHRNLDGYDLGLYAIFDGHSGHEVAKYLQSHLFENILSEPGFWEYPVQAVKKACKATDDEILENIADSRGGSTAVVAILVNGVKLLVANVGDSRAISCKNGLAKPLTVDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKEHITAEPDVTIRKIDEDTEFIILASDGLWKNHGLHKQVMTNQEACDSIKNADGAQKASKKLVKEAKSLGSYDDISCIVIMF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00268 406 PANTHER PROTEIN PHOSPHATASE 85 404 IPR015655 GO:0004722|GO:0006470
Spst3g00268 406 SMART PP2C_4 140 404 IPR001932 -
Spst3g00268 406 MobiDBLite consensus disorder prediction 62 84 - -
Spst3g00268 406 Gene3D - 152 406 IPR036457 -
Spst3g00268 406 ProSiteProfiles PPM-type phosphatase domain profile. 153 406 IPR001932 -
Spst3g00268 406 MobiDBLite consensus disorder prediction 62 136 - -
Spst3g00268 406 CDD PP2Cc 152 404 IPR001932 -
Spst3g00268 406 FunFam Probable protein phosphatase 2C 39 145 406 - -
Spst3g00268 406 MobiDBLite consensus disorder prediction 93 131 - -
Spst3g00268 406 Pfam Protein phosphatase 2C 165 398 IPR001932 -
Spst3g00268 406 SUPERFAMILY PP2C-like 147 406 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00268 Spst-Chr3 4800219 4805319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00268 150 406 PP2C-type Phosphatase Gene Family AT3G15260 57.752 1.85e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00268 - - gmx:100814772 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00268 3 4800219 4805319 Spst3g00268 3 4800219 4805319 ECH