Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00250 ATGTTGGCTCTAAAGCTTAGTTTGACAAAAGTCTTGGTCGTTTCCATTATATCCATAGTTTCCTATGCAAGCTTGAATGTTGAAATTGAAGCTCTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAATGGAGCTCTAGCAGATTGGGTTGAAGTCACCACCACTGCAACTGTTAGTCTTCAGCTCAAAGGGGAGATTTCAACTTTCCTTGGAAACATTTCAGGCCTTCAGGTTTTTGACATAACTTCATACTCATTCACTGGCTACATTCCTGCTCAGCTTACACATTTAGAATACCTTCTACTGTTCCAAAATTCCTTGAGTGGAAAAATCCCTTCCGAGCTTGCTAAGTGTAGCAAGCTTTTAAATCTTGAGTTATATGAGAATCAGTTTACTGGAAGTATTCCTCCCGAGCTAGGAAATTTATTTCGGTTGGAGACTTTGAGATTATATCACAATAACTTGAATTCCACCATTCCCTCTTCCATATTCCGTCTACATGGAAATCTACTAGAAGGTAGAATACCTGATAAGCTCTCTGAATTAAAAGACCTCACCAAACTTTTGCTCCATCAAAACAAGTTGATTGGTAAAATACCTGATTCTATCTCAAAGCTTCATATGCTTTCACACTTAGACCTTCATGGAAACAAACTTAATGGGTACATTCCAAGAAGCATGGGGCAGCTTAATCATCTTTTAGTTTTGGACCTCTCTCACAACCAGATCAGAGGACCAATTCCCAGAGATGTCATTGCACGCTTCAAAAACATGCAGATCTATCTTAACCTTTCTTACAACCACTTGGATGGAAATGTTCCAGCTGAGTTGGGCATGTTGGAAATGATACAAGCTATTGACATTTCAAACAATAATCTTTCGGGTTTCATTCCCAGAACACTTGCTGGGTGCAGAAATCTGTTCAATCTCGATTTTTCACGAAACAATGTTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGGTTGAAAGCTTAAACCTCTCAAGAAACAATTTAGAAGGTGAAATCCCAGAAATATTGGTAGAACTTGATCACCTCAGTTCCCTAGATCTTTCTCATAATAACTTGAATGGCAATATTCCTGAGGGCTTTGCCAAACATTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCTGTACCTACGACCGGAATATTTGCACACATCAATGCATCCAGTATAATGGGAAACCAGAATCTTTGTGGAGCAAAGTTCTTATCGCCATGCGAAGTGGGAAGACATTCACCATCTAAGAAAGGCATATCTATTATCGCTGCACTAGGATCTCTTGCTATACTTTTATTTCTAGTGTTGGTGTTTCTAATTCTCAATAGAGTAACGAAACTCAGAAATTCTAAAGAAAGGGATATTAGTGTGAATCATGGACCAGAATACAGTTCTGCATTGACTCTTAAAAGGTTAAATTCAAAGGACTTGGAAAATGCCACTAGTTTCTTCAACACTGATACCATCATTGGTGGTAGTAGTCTGAGCACAGTTTACAAGGGCCACATGGAAGATGGCCGGGTTGTAGCCTTTAAAAGATTGAACTTGCAACAATTTTCTGCTAATACTGACAAGATCTTCAAGAGAGAAGTCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTAATTGGATATGCCTGGGAGACTGGGAAAATGAAAGCTTTGATTTTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGGAAAAGGGGTGGATCAGCTTGTGATCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCACTGGACTATTTGCACTCTGGTTATGATTTTCCCATTGTACACTGTGATTTAAAGCCATATAACATCCTCTTAGATGGACAATGGGAAGCTCATGTCAGTGACTTTGGAGCAGCCCGAATACTTGGCCTTCATCTGCAGGATGGAAGTAACCTTTTGTCATCAGCAGCTTTGCAAGGCACAATTGGCTGTATGGCACCAGAATTTGCCTACATGAGGAAAGTAACCACTAAAGCGGATGTATTCAGCTTTGGTATCATAGTAATGGAGGTTCTAACAAAAAGAAGGCCAACAGGACTCTCAGAAGAGGATGGTTTGTCAATCACTTTGCGTGAAGTAGTGGCAAAAGCCCTTGCAAATGGAATAGAAAAACTTGCCAATATTGTGGACCCTTTGTTGTACTGGAATGTTACCCAAGACCGTGATGAAGGGTTGCCACAGCTCATTAAGTTATCCCTGTGCTGCACCCTCCCTGATCCTGAACATCGACCCAATATGAATGTGTTTTATCTTCCCTTAAGAAGCTTCAAACAGCACTGTCCTGTTAAATGA 2400 0.4025 MLALKLSLTKVLVVSIISIVSYASLNVEIEALKAFKNSITGDPNGALADWVEVTTTATVSLQLKGEISTFLGNISGLQVFDITSYSFTGYIPAQLTHLEYLLLFQNSLSGKIPSELAKCSKLLNLELYENQFTGSIPPELGNLFRLETLRLYHNNLNSTIPSSIFRLHGNLLEGRIPDKLSELKDLTKLLLHQNKLIGKIPDSISKLHMLSHLDLHGNKLNGYIPRSMGQLNHLLVLDLSHNQIRGPIPRDVIARFKNMQIYLNLSYNHLDGNVPAELGMLEMIQAIDISNNNLSGFIPRTLAGCRNLFNLDFSRNNVSGPIPAEAFSHMDLVESLNLSRNNLEGEIPEILVELDHLSSLDLSHNNLNGNIPEGFAKHSNLVHLNLSFNQLEGPVPTTGIFAHINASSIMGNQNLCGAKFLSPCEVGRHSPSKKGISIIAALGSLAILLFLVLVFLILNRVTKLRNSKERDISVNHGPEYSSALTLKRLNSKDLENATSFFNTDTIIGGSSLSTVYKGHMEDGRVVAFKRLNLQQFSANTDKIFKREVNTLSQMRHRNLVKVIGYAWETGKMKALILEYMENGNLDSIIHGKGVDQLVISRWTLSERVRVFISIASALDYLHSGYDFPIVHCDLKPYNILLDGQWEAHVSDFGAARILGLHLQDGSNLLSSAALQGTIGCMAPEFAYMRKVTTKADVFSFGIIVMEVLTKRRPTGLSEEDGLSITLREVVAKALANGIEKLANIVDPLLYWNVTQDRDEGLPQLIKLSLCCTLPDPEHRPNMNVFYLPLRSFKQHCPVK 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00250 799 Gene3D Ribonuclease Inhibitor 166 427 IPR032675 -
Spst3g00250 799 Gene3D Transferase(Phosphotransferase) domain 1 580 797 - -
Spst3g00250 799 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 580 796 - -
Spst3g00250 799 Pfam Protein kinase domain 502 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00250 799 FunFam Leucine-rich repeat receptor-like protein kinase TDR 167 426 - -
Spst3g00250 799 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 461 579 - -
Spst3g00250 799 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 93 166 - -
Spst3g00250 799 PRINTS Leucine-rich repeat signature 234 247 - -
Spst3g00250 799 PRINTS Leucine-rich repeat signature 354 367 - -
Spst3g00250 799 Gene3D Ribonuclease Inhibitor 25 165 IPR032675 -
Spst3g00250 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Spst3g00250 799 SUPERFAMILY RNI-like 62 398 - -
Spst3g00250 799 ProSiteProfiles Protein kinase domain profile. 501 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00250 799 SMART LRR_typ_2 354 377 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 183 207 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 379 403 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 231 255 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 95 119 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 281 304 IPR003591 -
Spst3g00250 799 SMART LRR_typ_2 143 167 IPR003591 -
Spst3g00250 799 PANTHER OS04G0122200 PROTEIN 170 772 - -
Spst3g00250 799 Pfam Leucine rich repeat 285 343 IPR001611 GO:0005515
Spst3g00250 799 SMART serkin_6 501 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00250 799 Pfam Leucine rich repeat N-terminal domain 27 51 IPR013210 -
Spst3g00250 799 SUPERFAMILY Protein kinase-like (PK-like) 480 784 IPR011009 -
Spst3g00250 799 Gene3D Phosphorylase Kinase; domain 1 461 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00250 Spst-Chr3 4503387 4508471 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00250 63 783 Receptor kinase-like Gene Family AT5G46330 47.051 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst3g00250 Pkinase 7.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00250 K13420 - gmx:100817960 1029.62