Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00248 ATGGTGCTGTCCCTAAAGATTACTTTGACTATAGTCCTTGTCCTTTCCATTGTATCCATAGTTTCCCTTGCTGAAACAAGCTTGGATGTTGAAATTGAATCGTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAATGGTGCTCTAGCAGACTGGGTTGACAGTCATAATCACTGCAACTGGTCTGGCATTGCATGTGACCCATCTTCAAATCATGTCATTTCAATTTCTCTGGTTAGTCTTCAACTCCAAGGGGAGATTTCTCCTTTCCTTGGGAACATTTCAGGCCTTCAGGTTTTTGACATCACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCAGTCTTTGCACTCAACTTACTCAGCTGATTCTTGTTGATAATTCTCTCTCAGGTCCTATCCCTCCTGAATTAGGAAACTTTAAAAGCCTACAGTATTTGGATTTAGGTAGCAACTACTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTAGGTATTGCTTTCAATTTCAACAACCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAACCTTGAACAGGTTGCAGGTTTTGGAAATAATTTGGTAGGATCTATACCGCTTTCCGTAGGTCAGTTACGAGGCTTGAGAGCTCTTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAACCTGCCAAAATTAGAATACCTTGAATTGTTCCAAAATTCCTTGAGTGGTAAAATTCCTTTTGAGCTTGGTAAGTGTAGCAATCTTGTAAGCCTTGAGTTATCCACCAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGCAGACACTGAAGTTACATCAGAATAATTTGAATTCCACCATCCCATCTTCCATATTCCAGTTGAAATCATTGACACATTTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCTGAGATTGGATATATGAACTCCTTGCAAGTTCTAACCCTGCATTTGAATAAGTTAACTGGGGGGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTTTTCTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGCAGTTTCTTGTTTTGAGCAACAACTATCTTAATGGATCCATTCCCCCTAGCATTACCAATTGTACGAGACTGGTAAATGTAAGTTTGTCTTTTAATGCTTTAAGTGGGAAAATTCCTGAGGGTTTTTCCAGGTCGCCTAATCTTACTTTCCTGTCTCTTGCGTCCAACAAAATGACTGGGGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCTCTCTAAGTTTGGCAATGAATAACTTTAGTGGATTGATAAATTCAGGTATCCAGAACCTGTCTAAACTTCAGCGCTTACAGCTGAATGTAAATTCTTTCATAGGACCCATTCCACCAGAGATTGGAAACTTGAATCAACTCATCACTCTATCCCTCTCTGAAAATAAGTTTTCTGGTCAAATTCCTCCAGAACTGTCTAAACTTTCCCGCCTTCAGGGGCTCACTCTTCATGCCAATGAATTAGAAGGTACAATACCTGATAACCTCTCCGAAATAAAAGCACTAACCAAACTTTTCCTGCATCAAAACAAGTTGGTTGGTCAAATACCTGATACTCTCTCAAAACTTAAGATGCTTTCCTACTTAGACCTTCATGGCAACAAACTTAATGGATCCATTCCAAGAAGCATGGGGAAGCTAAATCAACTTTTAGTTTTGGATCTCTCCCACAACCAGCTCACAGGATCAATTCCTGGAGATGTCATAGCAAACTTCAAAAGCATGCAAATGTATCTTAACATTTCTTACAACCACTTGGTTGGAAATGTTTCAACTGAGTTGGGCATGTTGGAAATGATACAAGCTATTGACATTTCAAACAATAATCTTTCGGGTTTCATTCCTAAAACACTTGTTGGGTGCAGAAATCTATTCAATCTTGATTTTTCAGGAAACAGTATTTCAGGTCCTATTCCCGCTGAAGCATTTAGTCGCATGGACTTGCTTGAAAGCTTAAACCTCTCAAGAAATCATTTAGATGGTGAAATCCCTGAAATATTGACAGAACTTGACCATCTTAGTTCCCTGGATCTTTCTCAGAATGACTTGAAGGGAATTATTCCTGAGGGTTTTGCCAACCTTTCCAATTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCGGTGCCTAAGACCGGAGTATTTGCACACATCAATGCATCTAGTATGATGGGAAACCAGGATCTTTGTGGAGCTAAGTTCCTATCGCCATGCAGGGAGACAAAACATTTACTTTCCAAGAAGGCCATATTTATAATTGCTTCACTTGGATCTCTAGCTATACTACTAGTGTTAGTGCTTCTAATTCTCAGTCGTGGCACCAAACTCTGTAATTTTAAAGAAAGAGATATCAGTGTAAATCATGAACCAGACTACACTTCAGCATTGGCACTTAAAAGGTTCATTCCAAAGGAATTGGAGAATGCCACCGGATTTTTCAGTGCAGATAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCAAGTTGTTGCCATCAAAAGATTGAATTTGCAACAATTCTCTGCAAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGCAGAGCGGGAAAATGAAGGCTTTGGTTTTAGAGTACATGGAAAATGGAAATTTAGATAGCATCATACATGGCAACAGGGTAGATGAGTCTGCAATCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTCTTCATATCTATTGCTAAAGCATTGGAATATTTGCACGCGGGTTATCATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATTCTATTAGATAGAGAGTGGGAAGCTCATGTAAGTGACTTTGGGACAGCTCGAATACTTGGTCTTCGTCTGCAAGATGGTACCCTTTCGTCAACAGCAGCTGTGCAAGGCACAGTTGGCTACATGGCACCAGAATTTGCCTACACGAGGAAAGTAACCACTAAAGCAGACGTGTTCAGCTTCGGTATCATAGTAATGGAGTTCCTAACAAAAAGAAGACCAACAGGACTCTCGGAAGAGGATGGTTCGCCAATCACTTTGCGTGAATTAGTGGCTAAAGCAATTGCAAATGGAATAGAACAGTTTGTCAATATTGTGGATCCTTCGTTGACCTGGAATGTCACAAAAGACAATGATGAAGTGTTGGCAGAGCTCTTAAAGCTATCCCTGTGCTGCACCCTCCCTGGTCCTGAACAGAGACCCAATTCGAATGAGGTGTTATCTGTCCTTTTGAAGCTTCAAACAACACTGTCTTCTTAA 3492 0.4038 MVLSLKITLTIVLVLSIVSIVSLAETSLDVEIESLKAFKNSITGDPNGALADWVDSHNHCNWSGIACDPSSNHVISISLVSLQLQGEISPFLGNISGLQVFDITSNSFTGYIPAQLSLCTQLTQLILVDNSLSGPIPPELGNFKSLQYLDLGSNYLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNLEQVAGFGNNLVGSIPLSVGQLRGLRALDFSQNKLSGVIPREIGNLPKLEYLELFQNSLSGKIPFELGKCSNLVSLELSTNQLIGSIPPELGNLVQLQTLKLHQNNLNSTIPSSIFQLKSLTHLGLSQNNLEGTISSEIGYMNSLQVLTLHLNKLTGGIPSSITNLTNLTYLSMSQNLFSGELPSNLGVLHNLQFLVLSNNYLNGSIPPSITNCTRLVNVSLSFNALSGKIPEGFSRSPNLTFLSLASNKMTGEIPDDLYNCSNLSSLSLAMNNFSGLINSGIQNLSKLQRLQLNVNSFIGPIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSRLQGLTLHANELEGTIPDNLSEIKALTKLFLHQNKLVGQIPDTLSKLKMLSYLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQLTGSIPGDVIANFKSMQMYLNISYNHLVGNVSTELGMLEMIQAIDISNNNLSGFIPKTLVGCRNLFNLDFSGNSISGPIPAEAFSRMDLLESLNLSRNHLDGEIPEILTELDHLSSLDLSQNDLKGIIPEGFANLSNLVHLNLSFNQLEGPVPKTGVFAHINASSMMGNQDLCGAKFLSPCRETKHLLSKKAIFIIASLGSLAILLVLVLLILSRGTKLCNFKERDISVNHEPDYTSALALKRFIPKELENATGFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSANTDKIFKREANTLSQMRHRNLVKVLGYAWQSGKMKALVLEYMENGNLDSIIHGNRVDESAISRWTLSERVRVFISIAKALEYLHAGYHFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLRLQDGTLSSTAAVQGTVGYMAPEFAYTRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGSPITLRELVAKAIANGIEQFVNIVDPSLTWNVTKDNDEVLAELLKLSLCCTLPGPEQRPNSNEVLSVLLKLQTTLSS 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 827 945 - -
Spst3g00248 1163 Gene3D Ribonuclease Inhibitor 547 792 IPR032675 -
Spst3g00248 1163 SMART LRR_typ_2 599 623 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 503 527 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 746 771 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 575 598 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 359 381 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 722 745 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 287 311 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 698 721 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 383 407 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 143 167 IPR003591 -
Spst3g00248 1163 SMART LRR_typ_2 215 239 IPR003591 -
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 521 619 - -
Spst3g00248 1163 FunFam Piriformospora indica-insensitive protein 2 282 376 - -
Spst3g00248 1163 SUPERFAMILY Protein kinase-like (PK-like) 845 1158 IPR011009 -
Spst3g00248 1163 CDD STKc_IRAK 873 1157 - -
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 182 - -
Spst3g00248 1163 Gene3D Transferase(Phosphotransferase) domain 1 946 1162 - -
Spst3g00248 1163 SUPERFAMILY L domain-like 56 257 - -
Spst3g00248 1163 SUPERFAMILY RNI-like 201 490 - -
Spst3g00248 1163 PANTHER UNNAMED PRODUCT 384 1080 - -
Spst3g00248 1163 PRINTS Leucine-rich repeat signature 602 615 - -
Spst3g00248 1163 PRINTS Leucine-rich repeat signature 722 735 - -
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 377 472 - -
Spst3g00248 1163 SMART serkin_6 867 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00248 1163 Gene3D Phosphorylase Kinase; domain 1 832 945 - -
Spst3g00248 1163 Pfam Protein kinase domain 869 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00248 1163 Gene3D Ribonuclease Inhibitor 273 382 IPR032675 -
Spst3g00248 1163 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 183 281 - -
Spst3g00248 1163 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Spst3g00248 1163 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Spst3g00248 1163 Pfam Leucine rich repeat 203 252 IPR001611 GO:0005515
Spst3g00248 1163 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Spst3g00248 1163 Pfam Leucine rich repeat 718 759 IPR001611 GO:0005515
Spst3g00248 1163 Pfam Leucine rich repeat 653 711 IPR001611 GO:0005515
Spst3g00248 1163 SUPERFAMILY RNI-like 466 763 - -
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 620 796 - -
Spst3g00248 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Spst3g00248 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 946 1162 - -
Spst3g00248 1163 Gene3D Ribonuclease Inhibitor 83 272 IPR032675 -
Spst3g00248 1163 Gene3D Ribonuclease Inhibitor 383 546 IPR032675 -
Spst3g00248 1163 Gene3D Ribonuclease Inhibitor 20 82 IPR032675 -
Spst3g00248 1163 ProSiteProfiles Protein kinase domain profile. 867 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00248 Spst-Chr3 4488441 4492771 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00248 21 1158 Receptor kinase-like Gene Family AT5G46330 54.316 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst3g00248 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00248 K13420 - gmx:100788119 1931.76