Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00236 ATGATTGAGGGGTTCAATGATTTTCCCATAATATCTCAGAATGACCGAAGGAGAGTTTTTCGAACCAGGCCCAAAAAGCGAAGCCCAAAATGTAGGTGGAAACACGCGAGGTTGTTGTTGCAGCTGCTTGGTTTTTCTTTCATCTGGTTGTGTTCGACTGAATCTGGCAGAACAGAACACCCTCAACTTCTTGTTTTATTTTTTTGTTTTTCATCTGTCTGCGCAACAGAACAGAACACCCTCACCTCATTTCCCTTTCACTATTCAACTTCGATTTTCGTGACTGACATGGCTGGAGGTGTTGTTCAGCAGCTACTGAGGAGGAAACTCCACCCTCAATTTACTAACTCTTCCTTGTTGTCACCCATTGTAGCAAAGAAAGATGATACTGGGTCTACTGGCACTAGGTCCTTAAGAGCACTTGCATTAGTTGGAGTTGGTGTATCAGGCTTTTTTGGTTTTTCTACAATGGCAGCAGCTGATGAAGCTGAGCATGGCTTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGCGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCTGATGGCCCCAATGATGAGGGTGAGATGTTTACGCGCCCTGGTAAACTTAGCGACCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGGGCTTATCCTCCAGATCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTCGCCCTTCTAACTGGTTATCGTGATCCTCCTGCCGGTGTTGCGATAAGGGAAGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGTCATTCTTAAGTTGGGCAGCCGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGTCGTTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTGGTCAACTAG 1212 0.448 MIEGFNDFPIISQNDRRRVFRTRPKKRSPKCRWKHARLLLQLLGFSFIWLCSTESGRTEHPQLLVLFFCFSSVCATEQNTLTSFPFHYSTSIFVTDMAGGVVQQLLRRKLHPQFTNSSLLSPIVAKKDDTGSTGTRSLRALALVGVGVSGFFGFSTMAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVAIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00236 403 Gene3D - 163 358 IPR036909 GO:0009055|GO:0020037
Spst3g00236 403 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 358 402 IPR021157 -
Spst3g00236 403 FunFam Cytochrome c1, heme protein 163 358 - -
Spst3g00236 403 PRINTS Cytochrome C1 signature 319 338 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 192 211 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 172 191 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 339 358 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 270 294 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 237 257 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 308 319 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 PRINTS Cytochrome C1 signature 358 373 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 ProSiteProfiles Cytochrome c family profile. 186 293 IPR009056 GO:0009055|GO:0020037
Spst3g00236 403 PANTHER CYTOCHROME C1 127 401 IPR002326 GO:0009055|GO:0020037
Spst3g00236 403 FunFam Cytochrome c1, heme protein, mitochondrial 359 403 - -
Spst3g00236 403 Gene3D - 359 402 - -
Spst3g00236 403 SUPERFAMILY Cytochrome c 167 357 IPR036909 GO:0009055|GO:0020037
Spst3g00236 403 Pfam Cytochrome C1 family 174 390 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00236 Spst-Chr3 4121304 4135082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00236 97 403 Chloroplast and Mitochondria Gene Families AT3G27240 83.819 5.83e-178 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00236 K00413 - gmx:100789781 576.244