Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00225 ATGGCGAAAAAGGCAAAAGGGTCTCACTCTACTTCTTCGGCCTCTGGCGCTGCCGGTTCGGGTAAACTAGTGTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCGGTGCGGCAGATTAATTCAAGAAAGAAACCCAAAGCAAAGCAAAAGAAGAACAAGCGGAAGTTTGATGCTATGAAACCAAAGAAACCTCCTACGGCTTTCTTCTTTTTCTTGGAGGATTTTCGTAAGGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATGTAGCAACAGAAAAACGTGCAGAATTTGATAGAGCCATGGCAGAATATAACAAGAAAATGGAAAGTGGAGAGTTTGAGGAAACTGATGAAGAATCAGAGTTTGATGAGTAA 453 0.4084 MAKKAKGSHSTSSASGAAGSGKLVLRIKSNEGIKRSVRQINSRKKPKAKQKKNKRKFDAMKPKKPPTAFFFFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDRAMAEYNKKMESGEFEETDEESEFDE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00225 150 Gene3D High mobility group box domain 55 146 IPR036910 -
Spst3g00225 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Spst3g00225 150 SUPERFAMILY HMG-box 53 135 IPR036910 -
Spst3g00225 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 34 147 IPR031061 -
Spst3g00225 150 SMART hmgende2 61 132 IPR009071 -
Spst3g00225 150 MobiDBLite consensus disorder prediction 39 59 - -
Spst3g00225 150 MobiDBLite consensus disorder prediction 1 18 - -
Spst3g00225 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Spst3g00225 150 MobiDBLite consensus disorder prediction 1 62 - -
Spst3g00225 150 CDD HMG-box_AtHMGB1-like 63 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00225 Spst-Chr3 3974634 3979041 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst3g00225 HMG_box 1.2e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00225 - - vum:124844238 202.986