Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00222 ATGGAAGGGAAGATGATCAAACAGAAGCAAAAACGAGAGATTAAGAAGATTGAGAACAATAGAGATCTTCTCATCACTTTCACAAAAAGAAAACGTGACGTTCACAAGAAAGCTAGTGAGTTATCAACTCTCTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAATTGGTTCAGTTATGGGGAACCTTCTCACCGAGCCATGAGAATCTCTAATGAGAATGAAAACCCTACAGAAGATTTCATCAACCAGCTTGTGGAGGATCAAGCCAAATCAGAGATGTATGAACTATGTGAAAAAAACAAGACACTTGTAGATCAAATGCACTATGAGGAAGAACGAGAGAAAGAACTTAGAGAGAGTCTGAAGACAAGAAATGCCAGTGGTTGGTGGGAGGCCAAAGATCTTAATCGTGAACAAGCCAAAGAAATGAGGGTTTCTTTGATGGAACTCAAACAGAAATTGGAAAATGAACTTTCTGTCAAGCGTAGAGAGAAAGAGAATTCTTCTCATGCTCCCCCTAATCAAGTGAATGGATTCAATTTTTGCCCTAATTACACCAGTGGAAGTAGCATATCTGAAGTTGTGTTTGGTGCTAATAATGAAGCTTGTGTAATGGCTGCAACTGAAAGTATTCTTCCTGATATATCTTTTAGTCCCATAGAAGAAGGGAAAGAGTTCAAATTTTTTCCATATGGTGAACGAAGGGAAGATCTATTTGATATTGTTTATCCTCACAAAAATATTTATCATGGATACAGTTTTTTTGTTGATGGTCCAAAAGATAATGGTAAATCTGGTTTTGCTTCATTTCCTGCAAACCAAATGCAAGGACTTAACCCTGTTGATGCAAATGGAAGAACCACCAGTGCTCATGTTTTCTCATCATTTTCAAATCAATCCCGAGGAGATAACACATTTCTACCCAATCCAAATAATGAGACTATTGGAATAAGAGGTAATGTTGGTGGAAATGATGGTGGTGCTCTCTTTTCCTTCTCCCTTCTAAACCAACAGGAGGAGACTAATCCGTTTATGGACATTGAAAATGAGCTGAATGATGATTTTTCTTTTCCTCTATTCAGTGGTTATGATGACCAAGGCTGCTTCTAA 1122 0.377 MEGKMIKQKQKREIKKIENNRDLLITFTKRKRDVHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSHRAMRISNENENPTEDFINQLVEDQAKSEMYELCEKNKTLVDQMHYEEEREKELRESLKTRNASGWWEAKDLNREQAKEMRVSLMELKQKLENELSVKRREKENSSHAPPNQVNGFNFCPNYTSGSSISEVVFGANNEACVMAATESILPDISFSPIEEGKEFKFFPYGERREDLFDIVYPHKNIYHGYSFFVDGPKDNGKSGFASFPANQMQGLNPVDANGRTTSAHVFSSFSNQSRGDNTFLPNPNNETIGIRGNVGGNDGGALFSFSLLNQQEETNPFMDIENELNDDFSFPLFSGYDDQGCF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00222 373 PANTHER MADS BOX PROTEIN 9 167 - -
Spst3g00222 373 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 SUPERFAMILY SRF-like 8 71 IPR036879 GO:0003677|GO:0046983
Spst3g00222 373 Coils Coil 141 175 - -
Spst3g00222 373 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Spst3g00222 373 Gene3D - 19 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00222 Spst-Chr3 3954392 3955707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00222 1 171 Type I MADS-box Gene Family AT1G28450 32.967 9.26e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00222 SRF-TF 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00222 - K12412 ccaj:109813207 337.421