Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00202 ATGATGGCCGATGATCCAATGCCCACTCGCTGGTCGTTTCAGGTTTTGCACTTTCTCTTCTCCGCAGAACCCATTCTGATTCTCGATTTCTCTGTTTTTCGCTTTTCTTTCCTGAGGAATTCCGCATCGCAGTCTTACGTAGTTTTAATCTTGGATCTTCAGGACTTCAAATTTTATTATGATGCTAAGTTTGGTAGGAAGAAGGTCCAGAAGAACGGCGAGACTGCTGATAAACCGGTGGTCAGTAATGGAGGTTCGTTGGTCATCGTGTCCAATGGCAATCCGCATTCAAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCAAATTGAGGGGCAGAACCAGATTCACTCAAATGGTTTTTCGCCGGTTAATATGTGTGAAAGGCCGCAGCGGTCATTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTTAAGTGGGAAAGTATCAAGGGCTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTTATGCCAATTAAGTATCCCAAGTACTTCACAGGTCTGTTGTCACCATGGAAGGGCATCCTCCTTTTTGGGCCACCAGGCACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCATCATCTGTAAAGTTATTTTGGACTGCAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCTCCCTCAACAATATTTCTTGACGAAATTGATGCAATTATTAGTCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTTGTTCAGATGGATGGTTTGACCCGAACAGAGGAACTGGTTTTTGTCTTAGCAGCGACAAATCTTCCCTGGGAGTTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGTAGCGAGGAGAGCAATGTTTGAAGAACTTCTTTCTCAACAGCCTGATGACGAACCGATCCCCTATGATTTACTGGTTGATCAAACAGAAGGATATTCAGGGTCAGATATCCGATTACTCTGTAAAGAAACAGCAATGCAGCCATTAAGACGACTGATGTCACAACTTGAGCAGAGACAGGAGGAGGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGACCAATCAGAGCTGAAGATATAGAGACAGCATTAAGAAACACAAGACCATCTGCTCATCTCCATGCCCATAAATATGACAAGTTCAATGCTGATTATGGTAGTCAAATAATACAATGA 1344 0.4368 MMADDPMPTRWSFQVLHFLFSAEPILILDFSVFRFSFLRNSASQSYVVLILDLQDFKFYYDAKFGRKKVQKNGETADKPVVSNGGSLVIVSNGNPHSKRASEMAVYEQFQIEGQNQIHSNGFSPVNMCERPQRSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVKLFWTAGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLSQQPDDEPIPYDLLVDQTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQEEVVPEEELPKVGPIRAEDIETALRNTRPSAHLHAHKYDKFNADYGSQIIQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00202 447 SMART AAA_5 197 335 IPR003593 GO:0016887
Spst3g00202 447 FunFam Katanin p60 ATPase-containing subunit A1 159 342 - -
Spst3g00202 447 Pfam ATPase family associated with various cellular activities (AAA) 201 332 IPR003959 GO:0005524|GO:0016887
Spst3g00202 447 Gene3D - 334 423 - -
Spst3g00202 447 FunFam Katanin p60 ATPase-containing subunit A-like 2 334 423 - -
Spst3g00202 447 PANTHER AAA DOMAIN-CONTAINING 100 443 - -
Spst3g00202 447 Gene3D - 160 437 IPR027417 -
Spst3g00202 447 Pfam AAA+ lid domain 360 396 IPR041569 -
Spst3g00202 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 429 IPR027417 -
Spst3g00202 447 CDD RecA-like_VPS4-like 167 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00202 Spst-Chr3 3688427 3701384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00202 195 406 Calmodulin-binding Proteins AT3G56690 34.884 2.92e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00202 K07767 - gmx:100794098 676.011