Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00195 ATGAAGGGCAGTGGCTGCAGTCAAGCATCATCAAGAGGAGACATGAATGTGAAACCTGCATGGCTAGAGAGGCTTATGGCTGAGACATTCTTTGGTGGTTGTGGGGTCCACCAGAATCACAAGAAGAACGAGAAGAACGTCTTTTGCTTGCACTGTTGCCTTAGCATCTGCCCCCACTGTCTCCCTTCTCACCCTTCCCATTCTCTTCTCCAGGTTTTTGCTGACATTCAACTTTGGAGGTTTTCTGATAGTGTGAGAAGGTATGTGTATCATGACGTGGTTCGATTGGGTGATCTAGAAAAGCTCGTCGATTGCTCCAATATTCAGTTTGAGGGTCTAAGAGTTGATTGCTATGCCCAATTTGTCCCCACTTCCTCCTGCTCAAATGGTGGTGAGGCTACCACTAGCATTGCCACCACCAACAACAAGAACTCCAATGGCTTCTTCATCTCTCTAGGAAGCAGAAGAAAGGGGGCTCCCCATAGAGCTCCTCTCTCTTAG 501 0.479 MKGSGCSQASSRGDMNVKPAWLERLMAETFFGGCGVHQNHKKNEKNVFCLHCCLSICPHCLPSHPSHSLLQVFADIQLWRFSDSVRRYVYHDVVRLGDLEKLVDCSNIQFEGLRVDCYAQFVPTSSCSNGGEATTSIATTNNKNSNGFFISLGSRRKGAPHRAPLS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00195 166 ProSiteProfiles Zinc finger B-box type profile. 34 72 IPR000315 GO:0008270
Spst3g00195 166 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 110 - -
Spst3g00195 166 Pfam PLATZ transcription factor 86 109 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00195 Spst-Chr3 3511733 3515238 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Spst3g00195 PLATZ 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00195 - - gmx:102668349 243.047