Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00183 ATGAAAAGAGACATGGTTACGCCGGCATCTTCGCTGTTTCTGTCGTGTTGTCGCGCGTATCAGCTGAAGCTAGCAAGAAAGATGGTGAAGGGACGCCAAGGAGAGCGCATCAGACTCTATGTTAGGGGTACGATCCTTGGATACAAAAGGTCCAAGTCAAACCAATATCCCAATACATCCCTGATCCAAATTGAGGGAGTGAACACCAAAGAAGAAGTAGGATGGTATGCTGGCAAGCGAATGGCCTATATTTACAAGGCTAAGGTGAAGAAGAATGGAAGCCATTACCGCTGCATATGGGGCAAGGTTACAAGGCCTCATGGCAACAGTGGTGTTGTTCGTGCAAAGTTCAAATCAAACCTTCCTCCCAGATCAATGGGAGCACGTGTAAGAGTGTTCATGTATCCAAGTAACATATGA 420 0.4643 MKRDMVTPASSLFLSCCRAYQLKLARKMVKGRQGERIRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVGWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00183 139 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 41 133 IPR001780 GO:0003735|GO:0005840|GO:0006412
Spst3g00183 139 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Spst3g00183 139 SUPERFAMILY Translation proteins 39 133 IPR009000 -
Spst3g00183 139 PANTHER 60S RIBOSOMAL PROTEIN L35A 29 139 IPR001780 GO:0003735|GO:0005840|GO:0006412
Spst3g00183 139 Gene3D translation elongation factor selb, chain A, domain 4 34 139 IPR038661 -
Spst3g00183 139 ProSitePatterns Ribosomal protein L35Ae signature. 101 122 IPR018266 GO:0003735|GO:0005840|GO:0006412
Spst3g00183 139 Pfam Ribosomal protein L35Ae 39 133 IPR001780 GO:0003735|GO:0005840|GO:0006412
Spst3g00183 139 FunFam 60S ribosomal protein L35a 34 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00183 Spst-Chr3 3311619 3313720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00183 28 139 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 91.964 1.39e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00183 K02917 - gmx:100305958 230.335