Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00181 ATGGTGAAGTTCTTGAAGCCGAACAAGGCGGTGATCGTCCTGCAAGGCCGTTACGCAGGTCGGAAGGCCGTGATTATCAGGACCTTCGACGAGGGAACCAGGGAGCGCCCCTACGGCCACTGTCTGGTCGCCGGAATCAAGAAGTACCCTAGCAAGGTCATCAAGAAGGACTCCGCGAAGAAGACGGCGAAGAAATCGAGGGTGAAGGCCTTCGTGAAGCTCGTGAACTATCAGCACCTCATGCCCACGCGCTACACGCTCGACGTGGATCTCAAGGACGCCGTCACCCCCGACGTTCTTGTCTCCAAGGACAAAAAGGTCACCGCTCTCAAGGAGACCAAAAAGCGCCTCGAGGATAGGTTCAAGACTGGCAAGAATAGGTGCCTTCTTCCCGTAAAAAGTGTTGGCCGCAGGCTAATTGAGCGTGTATCTACATATTACAACTACGTTTCGGAGTATGAGCAGCACGAGATCTATAACTCTACTATAAAAGAGATTGCGCGGGGTTTATGCCAGGATCTTAGCTTTGTCAAGCCTTCTATTTTGCCTGCAGACAACGATGGCCTGAATGAAGGAAAGGATGTCAATGTTATCCCAAAAAACATCATCTGTCAGGACAGAGTAGGGATAGTTGTAATAGAAGAAAATGTTGATCAAAAGGTTGGTGCTTCTCCTGATAATCACGTTAGGATATCTTCCAAAAACTCACTGGTTATCCGGATTCTTGTTGATGGCAACTCTGGTAATAACCAAGCTGGTGCATACCGCATTCTTGCCGAGGATTCTGTTATGGACACATTGGACGTACACAACGATCATACTAGCCCATTACCAAATGTGATAGTTGCACAAGATCTCAAGGTTGTCTCTAAGCTTGGACTGACATGA 888 0.4842 MVKFLKPNKAVIVLQGRYAGRKAVIIRTFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLVSKDKKVTALKETKKRLEDRFKTGKNRCLLPVKSVGRRLIERVSTYYNYVSEYEQHEIYNSTIKEIARGLCQDLSFVKPSILPADNDGLNEGKDVNVIPKNIICQDRVGIVVIEENVDQKVGASPDNHVRISSKNSLVIRILVDGNSGNNQAGAYRILAEDSVMDTLDVHNDHTSPLPNVIVAQDLKVVSKLGLT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00181 295 SMART kow_9 4 31 IPR005824 -
Spst3g00181 295 Gene3D - 1 131 IPR038655 -
Spst3g00181 295 Pfam Ribosomal L27e protein family 52 129 IPR001141 GO:0003735|GO:0005840|GO:0006412
Spst3g00181 295 Coils Coil 100 127 - -
Spst3g00181 295 PANTHER 60S RIBOSOMAL PROTEIN L27 1 130 IPR001141 GO:0003735|GO:0005840|GO:0006412
Spst3g00181 295 FunFam 60S ribosomal protein L27 1 133 - -
Spst3g00181 295 SUPERFAMILY Translation proteins SH3-like domain 2 108 IPR008991 -
Spst3g00181 295 CDD KOW_RPL27 6 88 IPR041991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00181 Spst-Chr3 3304521 3306860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00181 1 130 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.000 1.40e-71 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00181 K02901 - gmx:100527246 237.269