Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00174 ATGGCTCAAACCCAGTGTGAGCCTCCCACACCTTCCTCTTCCTTTGGCCCCATCATAAGCACACCACGTGATGACCAAGTTGGTGGCTTTGATGGGATGGTTCTTATTGCAGCCATTGTATGTGCTTTGGTGTGTGCTCTTGGCCTCAACACTATGTTGCAATGTGTCTTCCAATGTGCTTTGCGTGTCCTGACGCAACCACGCCAATGGATTGCTTCTCGTAGGCTGAATTGTGGTCTGAAGAGGAAGGAAATGGTGGCTTTGCCAACCTCAACCTACACGCACTCTGCCTCTCCATCTTCATCACCTTCCACTTGTGTGATTTGCTTGGCTGAGTTCTCTGATGGGGACCCTGTAAGGTTCCTACCAAAGTGCAACCACTATTTCCATGTGATTTGCATCGACGAGTGGCTCCTCTCTCACTCTTCTTGTCCTACTTGCAGGCACCTACTCAACTCAAATCATCATCTTCAATCCTTACATCCTGACATACCTTAG 498 0.488 MAQTQCEPPTPSSSFGPIISTPRDDQVGGFDGMVLIAAIVCALVCALGLNTMLQCVFQCALRVLTQPRQWIASRRLNCGLKRKEMVALPTSTYTHSASPSSSPSTCVICLAEFSDGDPVRFLPKCNHYFHVICIDEWLLSHSSCPTCRHLLNSNHHLQSLHPDIP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00174 165 SMART ring_2 106 147 IPR001841 -
Spst3g00174 165 CDD RING-H2_EL5-like 106 148 - -
Spst3g00174 165 SUPERFAMILY RING/U-box 105 155 - -
Spst3g00174 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Spst3g00174 165 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Spst3g00174 165 PANTHER RING-H2 FINGER PROTEIN ATL78 21 153 IPR044602 GO:0016567|GO:0016740
Spst3g00174 165 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00174 Spst-Chr3 3218325 3218822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00174 33 151 C3H Transcription Factor Family AT3G10910 44.882 1.24e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00174 - K19040 gmx:100779286 239.58