Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00171 ATGAGTATGTTGGCTCCTTCAATCCCTAGCTGCGCAAAACCCTTTGCAAGAGTAAACCCTTCTCTTCTTACGCTGAGGGCATCTTCTCTACGCCATGACTACCCCCTCGCAAGTAAAATTATTGTTAAAAATTTACCATATTCTACTGGTGAGACTACTTTGCAAAAGGAATTTTCAAATTTTGGGAAGATAGCTGAAGTTAAAATGGTTAAAGATATGAACACAAAACGATCTAAGGGTATTGCTTTCATTCAATATACATGCCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTACGGTCGAACAATCTGTGTGGAAATTGCTAGACTGGGTTGGGATTATTTTGGTGCAACCCCAAGGGCCTCAGGACCCCCAAAGAAGTGGGATTTGCCAGAACAAGAAGAAGTGGTAGATTGTTGGTATTGA 444 0.4099 MSMLAPSIPSCAKPFARVNPSLLTLRASSLRHDYPLASKIIVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDMNTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTICVEIARLGWDYFGATPRASGPPKKWDLPEQEEVVDCWY 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00171 147 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 119 - -
Spst3g00171 147 Gene3D - 26 139 IPR012677 -
Spst3g00171 147 FunFam glycine-rich RNA-binding protein 4, mitochondrial 26 141 - -
Spst3g00171 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Spst3g00171 147 SUPERFAMILY RNA-binding domain, RBD 37 117 IPR035979 GO:0003676
Spst3g00171 147 SMART rrm1_1 39 112 IPR000504 GO:0003723
Spst3g00171 147 CDD RRM_SF 40 112 - -
Spst3g00171 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00171 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 25.676 9.24e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00171 - - gmx:100305971 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00171 3 3187144 3188802 Spst3g00171 3 3187144 3188802 ECH