Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00161 ATGGCCAAAATTTCTTCTGATCAAGAGGAGAAGGGTCTCCAACGAATCCCACCAAGTCTTAGGGTCCTTGCCATTGACACTGATCCCACAGTTCTTGATTTCATCAAGAAAACATGCAACCAGTATGGTTATCAAGTTATCACTTGCTCAGAATCTGTAATTGCTGCAAATGTTTTGCGGGAAAGCAAAGGACGTATTGATTTGATACTCATTGAAGTTCATATGCCAATCATGGATGGCTATCAATTCCTACAATTTGTTAACCAGGAAATTTATGTTCCTGTCATTTTGATGTCTTCGGATGATAGTCAGAGTTCTGCATACAAGGCTTTTGAACTTGGAGCTTGTGATTATTCGGTGAAGCCTTTGAATGAGAAGGAGTTGAAGAATATGTGGAAACATGTCTATAGGAAGTCCATCAGGGAAACTAAGCAAAAAGATATTGGCAGCTTGGAAGACGATAATCAGAAAAGAGGGATCAATGATAATTCTGAATTTGTTTCTTCTTCTGTGATTGAAAGAACCAATAGCAATATCAGAGAATTTGATAATGTTGGTGAATCTGAGAATAGAGATGAACCTCCCAAAAAGAAACCCCGTTTAGTATGGTCAACAGAATTGCATCTTGCTTTTGTCAAGGCTGTTAATCAAATTGGACATGCTATTTTTGTTTTCTTCCTTAATTGTTATCTTCTAGAAGCTGTTCCAAACAAAATTCTTGAACTCATGAATGTCCACGGTTTGACAAGAAATAATGTTGCTAGTCATTTGCAGACGAATTCTGATACAGTGAGACAGAGACATCCGAGACAACCACAAAATGAGATGCAAGGGACAATAGAACCTAGGGTGGGTGCATATGGAAGAATTCACTTGCAACCTTTTTCTGCTACTGTCAATGTTACCAATGAAACACTGGCAGATCTTCATCCTGGTCTCACAGGTAACATGGTTCTACCAAAAAGAGACCACCAATCTGCTCCAAATATGCAACTGGCTAAACATTTTGATGCAGAAAGTGTTTTGGGTTTGGCCCAACATAGTCATCCCCTGTCTACCTGTCCTAATATGACCATCCTGCAGAATTTTCCAGAGTCTATGGGAACTCTAGATGTTGCATTTAGATATGGAGTATGGTCTCCATCTAACACAGTGTTAGCTGAAAATCATCAGACTATGGTTCAGAGAAACAGTGTGTCAGTGGATACATTGCAGCAGCCAGTGATGCATCATCAAATTCACCCAATTAACTTGCAGGCATCTTCCATGATGTTTTCTGGAAATTCAGCTTCTGTCAACCAGAATGGCACCCTTGGCTGGAATATGGATCACACCTCAACCTAG 1344 0.3973 MAKISSDQEEKGLQRIPPSLRVLAIDTDPTVLDFIKKTCNQYGYQVITCSESVIAANVLRESKGRIDLILIEVHMPIMDGYQFLQFVNQEIYVPVILMSSDDSQSSAYKAFELGACDYSVKPLNEKELKNMWKHVYRKSIRETKQKDIGSLEDDNQKRGINDNSEFVSSSVIERTNSNIREFDNVGESENRDEPPKKKPRLVWSTELHLAFVKAVNQIGHAIFVFFLNCYLLEAVPNKILELMNVHGLTRNNVASHLQTNSDTVRQRHPRQPQNEMQGTIEPRVGAYGRIHLQPFSATVNVTNETLADLHPGLTGNMVLPKRDHQSAPNMQLAKHFDAESVLGLAQHSHPLSTCPNMTILQNFPESMGTLDVAFRYGVWSPSNTVLAENHQTMVQRNSVSVDTLQQPVMHHQIHPINLQASSMMFSGNSASVNQNGTLGWNMDHTST 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00161 447 SUPERFAMILY CheY-like 18 140 IPR011006 -
Spst3g00161 447 Gene3D - 195 267 - -
Spst3g00161 447 Gene3D - 19 156 - -
Spst3g00161 447 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 307 IPR045279 GO:0009736
Spst3g00161 447 CDD REC_typeB_ARR-like 22 136 - -
Spst3g00161 447 SUPERFAMILY Homeodomain-like 196 259 IPR009057 -
Spst3g00161 447 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 258 IPR006447 GO:0003677
Spst3g00161 447 SMART REC_2 20 132 IPR001789 GO:0000160
Spst3g00161 447 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Spst3g00161 447 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00161 Spst-Chr3 3019560 3021462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00161 4 258 Response Regulator Gene Family AT4G31920 36.293 1.76e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst3g00161 Response_reg 3.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00161 - - vra:106778071 309.686