Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00145 ATGGAGGAGGATGAGATTCAAGCACAGGCGTGTAAGTTCCCTAGAGTTGGTAACGGAAGGAACGAGGACATTGGAGAGTTGAGAAGAAGAGGCAGTGATGGAGAGAGCACGAACAGGTTCCACAGCTGGCACCACTCTTCGAGGATCATTAGGGTGTCTCGAGCATCTGGTGGGAAAGACAGGCACAGCAAGGTGATGACTTCAAAAGGGTTGAGAGACAGAAGGGTTAGGCTTTCTGTGACCACGGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCCAGCAAAGCCGTTGAGTGGCTTATCAAATCGGCTGCTGATGCCATTTCTGAGCTACCTTCTTTGAACACTTTCCCTGACACCCCCAAAAGCGATGACCAGAGGGCAAGTGCTGATGCTGCTGGGGTACATGACGAAAATGAGAATGAGCACGGCAATGGTACCTTTCATCAGCAGAACGACAAAAACAACCATAACCAGAGCCAGAACATGTCTTTGTCCAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAGGGCTCTGGCTTGTCCCTCTCCAGGTCTGACATCCGTGTGAAGGCCAGGGAGAGGGCAAGGGAGAGAACAGCCAAGGAGAAAGAAAAGGAAAAAGAGAAAGAAAACAATGAGTCTCCTCACAATGTTCCTCCTCCTCATCATCACAACCACCACAATGTTAACCCCATTTCACAAACCGCATCTTTCACTGAGCTTCTCACCGGTGGGATTCGCAATGCGGTCCCCACAACGGCCAGTCCCAAAGGGTGTGATGAGCCTAACATGATGTTCGAAAAAACTGGTAGACAGCAATGGTGTTCATCAGCTCCTATGGACTACTTTCTGAGGCCTTCCTCTTCTAAATCAATCCACCATCATCAATATTCTTCTTCCACTGGATTTTCATTGGCACAAATCCAACTGGGACATTCCCTTCCGGAGGCCATGAATAATAATGTCTCAGCCGCATTCAACGTTAGTGGTGAAAACCACCACCACTCATCAGATCCTCAGCTGCAGCAGCACTTCTCGTTCATTCCGGATCATCACCTAATGTCTGTGGTTACTTCTTCTTCCACTTCTCATCAGCCCAGCGGGAACGACTACAATCTCAACTTCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGCTGCCTCACCTGCAGAGGTTTTCGCCGCCTATAGACGGATCCACTGTACCCTTCTTCATTGGAGCAGCTCCACCTGCTCCACCTGCTCCTGCCATGGAGAACAGCAACAACAACCATCACCACCATCAGTTCTCTTCTGTTTTCGATGGCAGCCGCTTGCAACTTTACTATGCAGACGGAGGCCGCCATTCTGACCAGAAGGGGAAAACTAAGAACTGA 1428 0.4972 MEEDEIQAQACKFPRVGNGRNEDIGELRRRGSDGESTNRFHSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAISELPSLNTFPDTPKSDDQRASADAAGVHDENENEHGNGTFHQQNDKNNHNQSQNMSLSKSACSSTSETSKGSGLSLSRSDIRVKARERARERTAKEKEKEKEKENNESPHNVPPPHHHNHHNVNPISQTASFTELLTGGIRNAVPTTASPKGCDEPNMMFEKTGRQQWCSSAPMDYFLRPSSSKSIHHHQYSSSTGFSLAQIQLGHSLPEAMNNNVSAAFNVSGENHHHSSDPQLQQHFSFIPDHHLMSVVTSSSTSHQPSGNDYNLNFTMSSGLAGYNRGTLQSNSPSLLPHLQRFSPPIDGSTVPFFIGAAPPAPPAPAMENSNNNHHHHQFSSVFDGSRLQLYYADGGRHSDQKGKTKN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00145 475 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Spst3g00145 475 Pfam TCP family transcription factor 57 212 IPR017887 -
Spst3g00145 475 Coils Coil 196 220 - -
Spst3g00145 475 ProSiteProfiles R domain profile. 192 210 IPR017888 -
Spst3g00145 475 MobiDBLite consensus disorder prediction 19 40 - -
Spst3g00145 475 MobiDBLite consensus disorder prediction 429 448 - -
Spst3g00145 475 MobiDBLite consensus disorder prediction 193 227 - -
Spst3g00145 475 MobiDBLite consensus disorder prediction 117 237 - -
Spst3g00145 475 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 395 IPR005333 GO:0003700
Spst3g00145 475 MobiDBLite consensus disorder prediction 129 149 - -
Spst3g00145 475 MobiDBLite consensus disorder prediction 150 189 - -
Spst3g00145 475 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00145 Spst-Chr3 2630712 2632139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00145 35 475 TCP Transcription Factor Family AT4G18390 42.585 8.57e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst3g00145 TCP 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00145 - - gmx:100816799 561.607