Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00139 ATGGATGTTGCTGAGGTGGAAGGAAATCTATTTTCTGCAAGTGATGCTAAGTTGCATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCATCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCCGGTATTCAGGCATTATGCTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTATACTTGGCTATAACGGCAGATTCTGTACTCCTAAAATTTCAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGAAATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTATGAATGAGTTTGTCACTATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCGATGATTTGATTGCATTGCTCCAACAGGGAAGGAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATCTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCAGAAAGGAGAGCTCTGAAGAAACTCATAGAAAGGGCTCGATCTGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTCTTACACCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGAGAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCTGGGATCAATTGAGGATAGTGTTCCGGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAATTCAGTTGCTTTAATTTCAGACCAAATAATAGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAGTGGTTCAGTGATGGGCACAACAACTGCCCCAAGACCCAGCAGAAACTTGCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTGACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGACCTTAACTACTGGCAAATGTTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAGATAGTGCCAGCTCTTGCAAGTTGAAGGGTGTTGAAATGTTTCCTTTGGAAGAGAGCGTTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGCTTTCTGAAAATTTTGACTGAGGGAAACAATTGGGGGAGGCAATGTGAAGTGGTAGAACAGTTAAGGTTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCACTTTTTGCAATCGGCTGTCAATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAAGAAATGATTTCTAAAACAAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGCAACGAGTCAGGCTATCCAGTTCCTAATTCAGCTTCTCCAATCTGACTCTGATGTTCAATGCAAACAAGATGCTCTCCTTGCTCTCTATAATCTTTCTACCGTACCCTCCAATATTCAATACCTCCTTTCAATGGGCATCATTAGTGGCTTACAGTTCCTTCTTGATGGCAACAGTGATTGCATGTGGACAGAAAGATGCATAGCTGTTTTGATAAATTTAACTACTTCTCAAGTTGGAAGGGAGGAAATAGTATCAACTCCCGGACTCATTAGTGCATTGGCTTCAATACTGGACACCGGTGGGCTCTTGGAACAGGAGCAAGCTGTCTCTTTACTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTAGTGACATGGTCCTGCAAGAAGGGGTTATTCCAGCGTTAGTTTCAATATCAGTCAATGGGAGCCCAAGAGGCAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCTGTAAAGACACATCAGTGCCCACCCGAAACTGGTGATTTGTCTATGCCGCCAGCTGAAATGAACCCGCCATGCAAGTCTATTTCAAGAAGAAAATCTGGGAGAGCTTTTAGCTTTTTATGGAAAAGCAGGAGCTATTCTGTTTACCAGTGTTAA 2295 0.4144 MDVAEVEGNLFSASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITADSVLLKFQKAKSALEDSLRRVEEIVPQSIGCQVQEIMNEFVTIEFALDPSEKQVGDDLIALLQQGRKFNDSSDSNELESFHQAATRLGITSSRAALAERRALKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDENDSQGSAPCSPTVLGSIEDSVPGSHCQAFDRQLSKFSCFNFRPNNSRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLAHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQMLLSESESTNSKSVDSASSCKLKGVEMFPLEESVISEESVENGTESVSAQEEDTEQYFSFLKILTEGNNWGRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLHFLQSAVNEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIATSQAIQFLIQLLQSDSDVQCKQDALLALYNLSTVPSNIQYLLSMGIISGLQFLLDGNSDCMWTERCIAVLINLTTSQVGREEIVSTPGLISALASILDTGGLLEQEQAVSLLLILCNRSEECSDMVLQEGVIPALVSISVNGSPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETGDLSMPPAEMNPPCKSISRRKSGRAFSFLWKSRSYSVYQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00139 764 PANTHER U BOX DOMAIN-CONTAINING 21 709 - -
Spst3g00139 764 SMART arm_5 455 499 IPR000225 GO:0005515
Spst3g00139 764 SMART arm_5 540 581 IPR000225 GO:0005515
Spst3g00139 764 SUPERFAMILY ARM repeat 428 705 IPR016024 -
Spst3g00139 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Spst3g00139 764 Gene3D - 626 704 IPR011989 -
Spst3g00139 764 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Spst3g00139 764 Coils Coil 175 195 - -
Spst3g00139 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Spst3g00139 764 MobiDBLite consensus disorder prediction 712 741 - -
Spst3g00139 764 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Spst3g00139 764 SUPERFAMILY RING/U-box 279 355 - -
Spst3g00139 764 Gene3D - 427 609 IPR011989 -
Spst3g00139 764 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Spst3g00139 764 CDD RING-Ubox_PUB 281 333 IPR045210 -
Spst3g00139 764 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00139 Spst-Chr3 2514498 2518072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00139 1 763 U-box Gene Family AT1G24330 65.167 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00139 - - gmx:100794099 1341.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00139 3 2514498 2518072 Spst3g00139 3 2514498 2518072 ECH
Spst1g01904 1 27278968 27282581 Spst3g00139 3 2514498 2518072 PCT