Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00122 ATGGTCCTTTTGGATGCGGTGTTGGGAACGTTCAATGTGGCATTCTTTTATGTCATTTTGATATGGGTTTTGGTGGATAGCTTGAGACAAAGCAAGCTTAGCCGTGTTCCTGATGGGTATTTCAAGCGAGGAGCAATGATTTTTTCTCTGTTCTCTGTTTTATCTTGCGGTGTTATTTCCGTAATGAACATGACTCTTGTTTTTCATCATTATGGCTCTACGAGAGTCATAGGATTTAACTCGGTTTCATTGACACTCACTTGGGTTTTGGCTACTGTGGTTTCGTTTTATTCTGTGAAGACCGGAGTGAGGGAGAGTAAAAAGTTTCCCCTTGTGCTCGTACTATGGTGGGTTTTTGCTTCTCTCGTGGATGCAATCTCTCTGTCTATTAGGCTGGTGAAAGATTTAGAAGCAATCGACTTGCGGTTTTTCTTGTCAGAGGATAATGTAGTTGGCTCATTTTCCTTGCCTTTGTCGCTGCTTCTTTGCTTCAATGTTTGTAAAAGGGAGCACAGTGACATGGAAGAGGGGTTGCTTCAGAAAGAGAAGGAGGAGTGTTTCATGGAGGAACACCGTGACGAGGCCTTTAGTGATACAAGTGTGTGGAACAAGCTTACATTCCGTTGGTTGAATCCCATTTTCAAAACGGGTCGGATTAAAAAGCTTGAACTTTCTGATATTCCTCCTGTTCCTTGTTCTGAATCGGCGGAAAATGCTTCTTCCATGTTGGAAGGGTCACTCCGCAAACAGAAACTAGGAGAGAGTTCCTTGACAAAGGCTATTGCCAATTCTGTGTGGAAATCTTTAGCCTTAAATGCAGTATTAGCTGGTGTTAACACAGGTGCCTCCTATATAGGTCCATTGTTGATCACAAATTTTGTGAATTTTTTATTGGGGAATAATGGCGATTCAAGCGTTCAATATGGATTGGTTCTTGCATTTGTTTTCTTCCTCGCAAAGACCGTAGAGTCACTGAGTCAAAGACAATGGTACTTTGGCGCTCAACGAATTGGAATCCGGGTGCGCGCAGCTCTTATATCTCTAATTTATGGCAAGTCCTTGATGATGAAGTTTGCTGGACCAACACAAGGTAAAATCATCAATCTGATTAATGTGGATGTGGAAAGAATTGGGGACTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTAGCCTTGGTCATCTTATACATAAATCTGGGTTATATCCCTTCTTTTGCTGCATTTGGTGTCACCATTTTGGTCATGGTGTGTAACACACCTTTGGCCAATAAGCAAGAGGGTTTGCACTCTAAGATTATGGAAGCTAAGGATTCAAGAATCAAAATGACATCAGAGACCATGAAAAACATAAGAATTTTAAAATTGCATTCATGGGAGACCTCTTTCTTGCAGAAACTCCTCCAACTTAGGGAAACTGAGAAGGCGTGGCTGCAGAAATACCTCTATACATGCTCAGCAATAGCCACACTATTCTGGACATCACCAACTTTAGTTTCTGTCGTTACCTTTGGTGCTTGTATACTAGTGAAAACAGAACTAACAGCAGCTACAGTACTCTCAGCTTTAGCAACTTTTCGTATTTTGCAAGAACCAATCTATAACTTACCTGAACTTATCTCCATGATCATTCAAACAAAAGTATCTGTCGATCGAATCCAAGAGTTTCTTAAGGAAGATGATCAAAACCAATTCATAGATAGGCACACTTCAAAAAATTCATCCGTTGCAATTGAAATTAAGGCAGGGGAATATGCATGGGAAATAAACGATCAAACCCACAAGAAACCAACTATTCAAATTACAAGAAAATTAGTGATAAAGAAAGGTCAGAAGGTAGCAGTTTGTGGGTCAGTCGGGTCTGGAAAATCAAGCTTGCTGTGCTGTATTCTTGGGGAGATTCCATTAGTATCTGGGGCAGCAACCAAAGTCTACGGGACTAGAAGTTATGTGCCCCAAAGTCCTTGGATTCAGTCTGGAACCGTAAGAGAGAATATATTGTTTGGCAAGCAAATGAACAATGACTTTTACGAAGTTGTTTTGGATGGCTGTGCTTTGCACCAGGACATCAACTTGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGGGGCATAAACTTGAGTGGTGGGCAGAAACAGCGGATTCAGTTGGCAAGGGCTGTTTATAATGATTCAGATATATATTTCCTTGATGATCCTTTTAGTGCCGTGGATGCTCTTACTGGAAGTCATTTGTTTAAGAAATGTCTCATGAAACTTTTATATGATAAAACGGTTGTTTATGCTACTCATCAACTGGAATTCTTGGAATCTGCAGACCTCATTTTGGTGATGAAAGATGGAAAAATAGTGGAGTCAGGAAGATATAAAGATCTTATAGCATGTCCCAATTCTGAACTTGTTCAACAAATGGCAGCTCACCAAGAAACAGTACACCAAATAAACCCAAGCCAAGAAGATGATTCTGCTGCTAGCTGCAGACCCTACCAAAAAAATCAAATTGAAGTTGATCAGGAAAATATTCAAGAGATCATGGAAGATTGGAAGAGAAACAAAGAAGAGCAAACAGAGACTGGTCGAGTGAAATGGAGTGTTTACTCAACTTTTGTCAAATCTGCTTATAAAGGAGCACTTGTTCCGGTTATTCTTATCTGCCAAATCCTCTTTCAAGTAATGCAAATGGGAAGCAATTATTGGATGTCATGGGCTACGGAGCAGAGGGGCAGGGTCAACAACAAGCAGCTAATGGAAACATTTGTTCTTCTATCTTGTGGGGGCACCATCTTCATACTGGGAAGGACCGTTTTAATGGCAGCTGTTGCTGTAGAAACTGCTCAACGCCTTTTTCATGGAATGATCATATCAGTTTTCCGGGCACCTGTTTCATTTTTTGACACCACACCCTCAAGCCGAATTCTGAGTAGGTCATCAACAGATCAAAGTACAGTAGACACAGATATACCATATAGATTAGCTGGACTAGTATTTGCACTGATACAGTTATTAAGTATCATTGTACTAATGTCCCAAGTTGCCTGGCAAATCATTCTCCTCTTTTTTGTGGTGCTTGCTATTTCCATTTGGTATCAGTCTTATTACATCACAACAGCCAGGGAACTAGCTAGGATGGTAGGGATTCGAAAGTCTCCAATCTTGCATCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAATATTCTTGACCAAGGTTAAGGTTCTAATAGACGATTATTCTCGGGTAGCCTTTTACAATTTCGGCACCATGGAATGGTTGTCTGTACGAATCAATTTCCTCTTCAATTTGGTCTTCTATTTTGTTCTCGTCATATTGGTTACTCTTCCAAGGTCTACCATTGATCCAAGCTTGGCAGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTCCTACAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATATCGGTTGAGAGAATATTGCAATTCTCTAGCATACCCAGTGAAGCACCCTTAATTATTAAAGATTGCAGACCTGAACAAGAGTGGCCAAAGGAAGGAAATGTTAAACTACGTAACCTTCATATACGGTATGATCCTGCTGCTCCCATGGTTCTCAAAGGCGTCACTTGTGTCTTCCCAGGACAAAAGAAAATTGGTATAGTAGGCAGGACAGGGAGTGGAAAATCTACTCTTGTGCAAGCTCTCTTTCGAGTGGTTGAGCCTTTGGAAGGAAGTATACTTATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGTATAATTCCTCAGGATCCGACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCTCTAGAACAACACGCAGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTAGCTGAAATAGTAAGGCGGGATCCAAGACTTCTTGATGCACCAGTGGCCGAGAATGGAGAAAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTTGCTAGGCTACTGCTGAAGAAAAGAAGGATTTTGGTCCTAGATGAAGCTACGGCATCCATTGACACTGCAACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGTACAGTCATTACAGTAGCACATAGAATTCCGACAGTTATTGATACTGATTTAGTTTTGGTCCTTGATGAAGGGACAATTGCAGAGTATGATGACCCTGCTAAATTGCTGCAGAACAGTTCTTCTTCGTTCTCAAAGTTAGTTTCAGAATTTTTGCGGAGATCATCCCAAAGTAATTTCCAAAACAGATAA 4347 0.4095 MVLLDAVLGTFNVAFFYVILIWVLVDSLRQSKLSRVPDGYFKRGAMIFSLFSVLSCGVISVMNMTLVFHHYGSTRVIGFNSVSLTLTWVLATVVSFYSVKTGVRESKKFPLVLVLWWVFASLVDAISLSIRLVKDLEAIDLRFFLSEDNVVGSFSLPLSLLLCFNVCKREHSDMEEGLLQKEKEECFMEEHRDEAFSDTSVWNKLTFRWLNPIFKTGRIKKLELSDIPPVPCSESAENASSMLEGSLRKQKLGESSLTKAIANSVWKSLALNAVLAGVNTGASYIGPLLITNFVNFLLGNNGDSSVQYGLVLAFVFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLIYGKSLMMKFAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGYIPSFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKMTSETMKNIRILKLHSWETSFLQKLLQLRETEKAWLQKYLYTCSAIATLFWTSPTLVSVVTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMIIQTKVSVDRIQEFLKEDDQNQFIDRHTSKNSSVAIEIKAGEYAWEINDQTHKKPTIQITRKLVIKKGQKVAVCGSVGSGKSSLLCCILGEIPLVSGAATKVYGTRSYVPQSPWIQSGTVRENILFGKQMNNDFYEVVLDGCALHQDINLWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDALTGSHLFKKCLMKLLYDKTVVYATHQLEFLESADLILVMKDGKIVESGRYKDLIACPNSELVQQMAAHQETVHQINPSQEDDSAASCRPYQKNQIEVDQENIQEIMEDWKRNKEEQTETGRVKWSVYSTFVKSAYKGALVPVILICQILFQVMQMGSNYWMSWATEQRGRVNNKQLMETFVLLSCGGTIFILGRTVLMAAVAVETAQRLFHGMIISVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQIILLFFVVLAISIWYQSYYITTARELARMVGIRKSPILHHFSESIAGAATIRCFNQEQIFLTKVKVLIDDYSRVAFYNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIKDCRPEQEWPKEGNVKLRNLHIRYDPAAPMVLKGVTCVFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVLSKCHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDTDLVLVLDEGTIAEYDDPAKLLQNSSSSFSKLVSEFLRRSSQSNFQNR 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00122 1448 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524|GO:0016887
Spst3g00122 1448 Gene3D ABC transporter type 1, transmembrane domain 849 1181 IPR036640 GO:0005524|GO:0016020
Spst3g00122 1448 Gene3D ABC transporter type 1, transmembrane domain 250 568 IPR036640 GO:0005524|GO:0016020
Spst3g00122 1448 Pfam ABC transporter transmembrane region 271 537 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g00122 1448 Pfam ABC transporter transmembrane region 889 1127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g00122 1448 FunFam ABC transporter C family member 3 1183 1435 - -
Spst3g00122 1448 SMART AAA_5 1226 1411 IPR003593 GO:0016887
Spst3g00122 1448 SMART AAA_5 614 796 IPR003593 GO:0016887
Spst3g00122 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1193 1426 IPR027417 -
Spst3g00122 1448 CDD ABCC_MRP_domain2 1198 1418 - -
Spst3g00122 1448 SUPERFAMILY ABC transporter transmembrane region 264 563 IPR036640 GO:0005524|GO:0016020
Spst3g00122 1448 Gene3D - 1183 1436 IPR027417 -
Spst3g00122 1448 CDD ABCC_MRP_domain1 583 788 - -
Spst3g00122 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 801 IPR027417 -
Spst3g00122 1448 SUPERFAMILY ABC transporter transmembrane region 885 1182 IPR036640 GO:0005524|GO:0016020
Spst3g00122 1448 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g00122 1448 FunFam ABC transporter C family member 5 848 1181 - -
Spst3g00122 1448 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 887 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g00122 1448 Coils Coil 837 864 - -
Spst3g00122 1448 CDD ABC_6TM_ABCC_D2 885 1175 IPR044726 GO:0140359
Spst3g00122 1448 Gene3D - 604 844 IPR027417 -
Spst3g00122 1448 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 197 1438 - -
Spst3g00122 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1200 1434 IPR003439 GO:0005524
Spst3g00122 1448 Pfam ABC transporter 610 740 IPR003439 GO:0005524
Spst3g00122 1448 FunFam ABC transporter C family member 10 253 566 - -
Spst3g00122 1448 FunFam Multidrug resistance-associated protein 4 568 828 - -
Spst3g00122 1448 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359
Spst3g00122 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 811 IPR003439 GO:0005524
Spst3g00122 1448 Pfam ABC transporter 1217 1365 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00122 Spst-Chr3 2168477 2174099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00122 601 834 Calmodulin-binding Proteins AT2G36910 30.040 8.86e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00122 - - gmx:100809063 2449.85