Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00117 ATGGAAATGGAGTTAATATCCAGAGAAACCATCAAACCATCCACAGCAACTCCTCCCCACCTCAGAAACTACCCTCTCTGCTTCATAGACCACATCGTTTTCCGCAACTACATTCCAGTACTTTTCTTTTACTCTCCAAACCTTCGTTCCAACAACCACCAAACATCATCCAAAATATCAACTCTCAAGAAATCCTTGTCCCAAGTTTTGTCTCGATACTACCCCTTCGCGGGCAAGCTCAAAGACCAACTTTCCATCGAATGCAACGACCAAGGGGTGTCCTTTCTAGTCACAAGCTTCAGATGCAACCTTTCATGGATCCTCCACAACCCCACCCACGCATCGTTCAACCCTCTGTTCCCAGATGAACTACAGTGGAACCCCATGAAAACAACTTCAACCATAGTAGCCATTCAGATAAACTGTTTTGCATGCGGAGGAATCGCAATCAGCGTCTGCATGTGTCACAAAGTTGGCGACGCCGCCACACTTTCCAACTTCGTCAATGACTGGGCCGCATTCAACCGTCAAAATGAAAAACAAGAACAATTACCCTTCCCAGTTCCTGGGGCTTCATTTTTCCCGCAAGAAAACTTGCCTGTTTTCCCGGAAGCTGCGTTCGTGAAAAACGACACCGTCTGCAGAAGGTTCGTCTTCGAGGCTGCTAAGATTGACTCGCTCAAAGCCATGGTGTCCTCCCGCAACGTGCCCAACCCCACGCGCGTCGAAGTTGTCAGCGCGTTGATCTACAAGCGCGCCGTTTCATCGCTTGGGTTGACTTTCAAAACGACGGCGTTCCGTACCGCCGTGAACCTCCGCAATAGAACGGTTCCCCCACTTCCTGAAAAAAGCGTGGGGAACCTGGTTTGGTTCCTCTTCGTGTCCAACGCGCGGGAAGAGACTGAGCTGCACGAGCTGGTGCTGAAAATGAAGCACGGGCTGAGCGAGTTTTGTGACACTTACGGGAAGAAGTTTGGAGGGAAGAACAAGGACTCGGGGTTCATCACGGAGTGTCTGAAGCAGGCTACTGCGGCTCCCGAGCCTCGTGGCTCGGATGCGGAGAGGGAAGAGAGTTTGTTATGTTGCGCGAGTTGGTGCAGGTTTGCGATGTACGAAGCGGATTTTGGGTGGGGGAAACCGGTGTGGTTCACCACTAGCGAGTGCCCTGTGAAGAACAGCATTGTTTTGATGGATACGAGAGACGGTGAAGGGATGGAAGCGCTTGTGAACATGGAGGAGCATGCCATGGCCAAGTTTGAGCGTGACGTGGAGCTTCTTCAATATGCTTCTCTTAATCCTTCAGTTCCACATGCTAGCCTTACGATATAA 1329 0.5064 MEMELISRETIKPSTATPPHLRNYPLCFIDHIVFRNYIPVLFFYSPNLRSNNHQTSSKISTLKKSLSQVLSRYYPFAGKLKDQLSIECNDQGVSFLVTSFRCNLSWILHNPTHASFNPLFPDELQWNPMKTTSTIVAIQINCFACGGIAISVCMCHKVGDAATLSNFVNDWAAFNRQNEKQEQLPFPVPGASFFPQENLPVFPEAAFVKNDTVCRRFVFEAAKIDSLKAMVSSRNVPNPTRVEVVSALIYKRAVSSLGLTFKTTAFRTAVNLRNRTVPPLPEKSVGNLVWFLFVSNAREETELHELVLKMKHGLSEFCDTYGKKFGGKNKDSGFITECLKQATAAPEPRGSDAEREESLLCCASWCRFAMYEADFGWGKPVWFTTSECPVKNSIVLMDTRDGEGMEALVNMEEHAMAKFERDVELLQYASLNPSVPHASLTI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00117 442 Gene3D - 1 201 IPR023213 -
Spst3g00117 442 PANTHER F21J9.9 4 430 - -
Spst3g00117 442 Gene3D - 210 430 IPR023213 -
Spst3g00117 442 Pfam Transferase family 2 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00117 Spst-Chr3 2110770 2112098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00117 1 421 Monolignol Biosynthesis Gene Families AT5G48930 23.312 2.00e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00117 - - pvu:PHAVU_002G177000g 720.694