Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00109 ATGGAGAAGTTGGACATTTGTAAGAAAGGACATTCTAGCATAGATGGCTCAAGTCATGGCAAGAAAATGATTGAAGGAGATGCAAAACCAATCAATGTCGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCGTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAATGGAACAAACTGTCAGAGTCTTGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAACTCTGAGGATCTATGGGTGCTCACTTGCAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAGGAGGACTTTCTACGTTTCAACCTTTATATCAACAACCTACCTAAAGATCACCCGGATGCGCTTTTCATAATGTATTATGAATATCTCATTTGA 414 0.4034 MEKLDICKKGHSSIDGSSHGKKMIEGDAKPINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNKLSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDFLRFNLYINNLPKDHPDALFIMYYEYLI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00109 137 ProSiteProfiles Zinc finger RING-type profile. 41 79 IPR001841 -
Spst3g00109 137 SMART ring_2 41 78 IPR001841 -
Spst3g00109 137 SUPERFAMILY RING/U-box 32 83 - -
Spst3g00109 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 90 IPR013083 -
Spst3g00109 137 PANTHER RING FINGER PROTEIN 41, 151 31 135 - -
Spst3g00109 137 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g00109 137 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Spst3g00109 137 FunFam RING/U-box superfamily protein 22 88 - -
Spst3g00109 137 Pfam Ring finger domain 39 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00109 Spst-Chr3 1967095 1967610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00109 40 82 RAD5 or RAD16-like Gene Family AT5G05130 38.636 7.26e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00109 - - vum:124821954 280.796