Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00106 ATGTCGTGGAAGAAGCTATGGTGGAAGACACTATGTAACCGATATGACATTTGGTTGATTGATAATGGAACAACAAATCACATCACCTTTAATCTCGTTCAAAATAACTACGCCCCTTCAAAACAGGAGATTCTTTATCATCCACACACACGGTCCAACAAAACTGGGACTGAAATACGGAAGGAAGTGAGGAGTTTTTGCTCTTCTCTCAGACCCTTTGATCTTTATTTTCTCCTCTGGCTGGACAAGAAATTGGGAAGAAAGATGGAAATGATGGCATACCAGTTTTCCCGGTTACCTTACTCGGATTCCCTCAAACTGCTGGAGGCTGATATACAACATGCAAATGCTTTATATCTTGACCTCTTCCACATAATTATATACAAGGTACACAATGATGGTAGATCAAGTATGACTTCTCATGGAAGGAAAGCAACCATCAAGGACTTTTATGCTATTATTCTGCCCTCTCTTCAAAGGCTTCATGGTAGCATGGAGAAGTTGGACATTTGTAAGAAAGGACATTCTAGCATAGATGGCTCAAGTCATGGCAAGAAAATGATTGAAGGAGATGCAAAACCAATCAATGTCGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCGTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAATGGAACAAACTGTCAGAGTCTTGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAACTCTGAGGATCTATGGGTGCTCACTTGCAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAGGAGGACTTTCTACGTTTCAACCTTTATATCAACAACCTACCTAAAGATCACCCGGATGCGCTTTTCATAATGTATTATGAATATCTCATTTGA 906 0.404 MSWKKLWWKTLCNRYDIWLIDNGTTNHITFNLVQNNYAPSKQEILYHPHTRSNKTGTEIRKEVRSFCSSLRPFDLYFLLWLDKKLGRKMEMMAYQFSRLPYSDSLKLLEADIQHANALYLDLFHIIIYKVHNDGRSSMTSHGRKATIKDFYAIILPSLQRLHGSMEKLDICKKGHSSIDGSSHGKKMIEGDAKPINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNKLSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDFLRFNLYINNLPKDHPDALFIMYYEYLI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00106 301 PANTHER RING FINGER PROTEIN 41, 151 111 299 - -
Spst3g00106 301 Pfam Ring finger domain 203 243 IPR001841 -
Spst3g00106 301 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Spst3g00106 301 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
Spst3g00106 301 SMART ring_2 205 242 IPR001841 -
Spst3g00106 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 254 IPR013083 -
Spst3g00106 301 FunFam RING/U-box superfamily protein 187 252 - -
Spst3g00106 301 SUPERFAMILY RING/U-box 196 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00106 Spst-Chr3 1929505 1938005 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00106 - - gmx:100790422 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01928 1 27537689 27539703 Spst3g00106 3 1929505 1938005 PCT