Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00099 ATGAAACTTTCGTCAGCTGGTTTTAGTCCTCCATCCCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCACTTATTTCTTTACCAGCTGTTGGAAGCCGAGTAGTTTACTTTCCACAAGGTCACAGCGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCATATACCCAACTATCCAAGCTTACCACCACAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACCGAGACAGATGAAGTATATGCCCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACAGCCAGTGACACTAGCACTCATGGAGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCCCAACAACCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGAAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTCGGCATTCGGCGGGCTAATCGTCCTCAACCTGTAATGCCTTCATCAGTACTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACTAATAGTCGCTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTAAAAGCGGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGCACAATAACAGGCATAAGTGACTTGGATGTCCGGTGGCCAAATTCCCATTGGCGTTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTCGGGTGTCTTTATGGGAAATTGAACCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCTGGACTGCCTTCATTCCATGCAGGCTTGAAGGATGATGATTTTGGTATAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCTTCAATGGTGAATTATCCAACAGATGTGTACCAAGCTGTGGCTGCCGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCCAAACAGCATCCTACTTCCGTACTTCAATATCAGCAACCACAGAACTTCCCGAGCCGGTCATCTCCCTTAATGCAGACTCAAATCTTGCAGCAGTCTTATTCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAAACTCAAACACATTTTCAGCAGCATCTACAGCATCAGCACTCATTCAATAATCAGAATCAGCACCATCTTCTGCAGCAACAGCCACAACAAACACAACAGCCACAACAAACACAACAGCAACAACCGCAACTACAGCAACAACAGGTGGTAGATCATCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCATCTCAATCTCAATCGCCACCCATGCAAGCTATCTCTTCACTGCACCATCAGCAAAGTATTTCTGATTCAAACGGGAACCCTGCAACTAATTCTATTGTTTCTCCCCTGCATAGTATATTGGGTTCATTTGCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGGGCCTCTTGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAGCGTGTTGCAGTTGATCCTCTCCTTTCTTCTGGGGCATCACAATGTGTTCTGCCTCAAGTGGAGCAGTTAGGGCAACCACAAAGTACTATAGCACAAAATGCTATTACATTGCCACCGTTTCCTGGTAGGGAGTGTGCTATAGAAGGAAGCTCCGATCCTCAAAATCATCTTTTGTTTGGTGTTAATATAGATCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAATCAGCAGCAACAGTGGCCCACCGACTATACAATTTCAATCATCTAATTATCTCAACACCACAGGCCCTGATTCTTCAACGAATCCTGGAATCACACACAATATTGGTGAATCAGGCTTCCTGCAAACTCCAGAAAATGGAGGGCAAGGAAACCCACCGAAAAAAACCTTTGTGAAGGTTTACAAGTCAGGGTACATCGGAAGATCATTGGATATCACAAAATGCACCAGCTACCATGAGCTACGTCGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTCTCCCCTCAGGAAGTGCAGCAAATGGGTAACAATGGCCTTGAGCTTCTTAACTCAGTCCCAATTCAGAGGCTTTCCAGTGGCGTGTGTGAGGACTATGCAGGCCATGAGGACCCAAGAAGTATAAGCACTGGGATAACAACTGTGGGGTCTTTGAACTACTGA 2733 0.4559 MKLSSAGFSPPSQEGEKRVLDSELWHACAGPLISLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDDDFGINSSLMWLRDTDRGLPSLNFPGIGVSPWMQPRLDPSMVNYPTDVYQAVAAAALQDMWTSDPSKQHPTSVLQYQQPQNFPSRSSPLMQTQILQQSYSNSQEIPHPSQSQAQTQTHFQQHLQHQHSFNNQNQHHLLQQQPQQTQQPQQTQQQQPQLQQQQVVDHQQISSAVSTMSQFVSASQSQSPPMQAISSLHHQQSISDSNGNPATNSIVSPLHSILGSFAQDETSHLLNLPRASWVPVQPSTAWPPSKRVAVDPLLSSGASQCVLPQVEQLGQPQSTIAQNAITLPPFPGRECAIEGSSDPQNHLLFGVNIDPSSLLMHNGLSSLKGISSNSGPPTIQFQSSNYLNTTGPDSSTNPGITHNIGESGFLQTPENGGQGNPPKKTFVKVYKSGYIGRSLDITKCTSYHELRRELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGVCEDYAGHEDPRSISTGITTVGSLNY 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00099 910 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst3g00099 910 SUPERFAMILY CAD & PB1 domains 775 853 - -
Spst3g00099 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Spst3g00099 910 SMART B3_2 127 229 IPR003340 GO:0003677
Spst3g00099 910 Gene3D - 774 866 - -
Spst3g00099 910 FunFam Auxin response factor 772 866 - -
Spst3g00099 910 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Spst3g00099 910 MobiDBLite consensus disorder prediction 451 552 - -
Spst3g00099 910 Gene3D - 291 362 - -
Spst3g00099 910 FunFam Auxin response factor 291 362 - -
Spst3g00099 910 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Spst3g00099 910 FunFam Auxin response factor 125 229 - -
Spst3g00099 910 MobiDBLite consensus disorder prediction 736 775 - -
Spst3g00099 910 MobiDBLite consensus disorder prediction 736 772 - -
Spst3g00099 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst3g00099 910 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Spst3g00099 910 CDD B3_DNA 126 227 IPR003340 GO:0003677
Spst3g00099 910 Gene3D - 125 228 IPR015300 -
Spst3g00099 910 MobiDBLite consensus disorder prediction 569 600 - -
Spst3g00099 910 Pfam AUX/IAA family 769 862 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00099 Spst-Chr3 1692096 1697909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00099 1 483 B3 DNA Binding Superfamily AT1G30330 84.049 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst3g00099 AUX_IAA 2.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00099 - - gmx:100777789 1565.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00099 3 1692096 1697909 Spst3g00099 3 1692096 1697909 ECH