Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00026 ATGATTGGAAGTAAAGATTGTTTTGTTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAATGCACAATTTTAAGGCAAAAAACGAGTACCCAGATGAGAAATGTGTTGAATTTCTGAGAGATTCACAGGTGGGTGGTTGTGGAGGTGTTGATGGGGTTCTCCACTCAAAACCCACCGACGTTGTTGTTGGAAGCTCGGGGTTCCAGGATTTGACCCTCAGCTACCTTTGTGACAACCCAAAACTGAGTCTTGCTGAGAAAGAGAATCCTGCTAAAAGCTTTCTGAATTCCATTGAGAGAATGAGCCACAAAGGGAAAGAGGTTGTAATTTATGAGAACTTAAATCAGGATGGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGAAAGTTGTTGAGAGGGAGAGTAATAGGGAGAAGAAGCAAAAACTGGAGACACTCAATCTCTCTCTTGCTTTGCCTGAAGTGTCACTTTCCCTCACAGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGATTAAACCTTGCAGGCCATCCACTACTCACACTTCATATTCAAATGACTACACAGCAGCTTCTTTGTCCTACTCATATTCCCACCCATTGTCTCACAACCCAAGTTGCTCACTGACCCGCAATTCAACCGATAATTTTGAGTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACTAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTCTGTGCAACCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCTTATAATCATTCTTTTTTCCCTTCAGAGTTGCCTGCTAGGCCAAGGCTTGAAGCTCAGTCAGGCGACTCAAGGGGGAGGAGCCCTGAGAATCTTAGAATCTTGGATGGTTTGGTTGATGAGAAGGTAAGGAAGCATTCCAGACCAGAGAGAATTATAAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAATTAAGGGATACTTAAAGAATCTCATAGAGAAGCCTGACAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGACAGAAGATCTGACCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAAGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGAGGCTTGCCAGCTTCCTATCTAGCAAAGTTCAGTTGTCTGAGTTGGTAGAGATTTTCTTGTATAAGAGATGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATGTGTTCAGGAAATACGGGCTTTTGTAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAACACTTGTAGTTGGATAGGATGTGATGTTTGTTCCCATTGGTGTCATGCTGCCTGTGGCATTCACAGAAATCTTATCAAGCCTGGGCCTAGCTTGAACGGGCCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTTAAAGACGTGTTTGTGTATTGTGCAAAGGATTGGGGTCTTGAAACCTTAATGAAAGAGCTTGACTGTGTAAGGAGGATCTTCAGCGCAAGTGAAGATCGCAAAGGGAAGGAATTACATGTGGTCACGGCGTACATGCACTAA 1764 0.4337 MIGSKDCFVESEGENSRSKLSMHNFKAKNEYPDEKCVEFLRDSQVGGCGGVDGVLHSKPTDVVVGSSGFQDLTLSYLCDNPKLSLAEKENPAKSFLNSIERMSHKGKEVVIYENLNQDGKWVERDFLSLSEPREDSSKRSLEKVVERESNREKKQKLETLNLSLALPEVSLSLTASNALQNGDQLVRIKPCRPSTTHTSYSNDYTAASLSYSYSHPLSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALCNHGAGISSFMQGNSQYKTTSSYNHSFFPSELPARPRLEAQSGDSRGRSPENLRILDGLVDEKVRKHSRPERIIREIVSESITVMALTIQELTDDVIASIKGYLKNLIEKPDKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVAVKMRLASFLSSKVQLSELVEIFLYKRCRNVTCKHLLPVDDCDCKMCSGNTGFCSSCMCPVCLNFDCANNTCSWIGCDVCSHWCHAACGIHRNLIKPGPSLNGPSGTSEMQFHCIGCGHASEMFGFVKDVFVYCAKDWGLETLMKELDCVRRIFSASEDRKGKELHVVTAYMH 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00026 587 CDD PHD_OBE1_like 472 531 IPR047578 -
Spst3g00026 587 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 104 586 IPR004082 -
Spst3g00026 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Spst3g00026 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Spst3g00026 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 433 454 IPR004082 -
Spst3g00026 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Spst3g00026 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Spst3g00026 587 Pfam PHD - plant homeodomain finger protein 442 566 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00026 Spst-Chr3 831567 835421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00026 442 539 PHD Gene Family AT5G57380 29.293 7.45e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00026 - - gmx:100820216 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00026 3 831567 835421 Spst3g00026 3 831567 835421 ECH