Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00025 ATGACTACAAGAGACAGGCAAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAGTGTACCCTCTCTAATGGATAACTTCCCTCAAACTCTCCCAGACCCTCTAACTCCATCACCCATGGTTGTAGGCAGCACGACAAACACCAATAATAGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTATAATCATCACAATTCACAACACCAAGAAGATGTCTCCACCTATGCAAGTGGAGTCACTGCAACATCTATTGACTTCCCCCATTCACAACATCTAGGTTTGAACATGGGGAACTCCTACATCGACCACACCAACAACATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCCTTCCGTATCAGCAATCCATTTGGGACCCTACTACTGTTCAGGAATTACAAGACATGACCTATGCCAATCAAATTGAACAACAACAACAGCAAAATGAACAACAATTTCAGCAAATAGACACTCAAAACTGCAGCCAAAGCTACAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCAACCGATCTCCTCAACCTTCTCCACTTACCAAGATGCACAGCCTCATCTTTACATACCAATCCCACCATTTGCCTGACAAACCCAACTCAGAACACACCAAACTTTCATAATCCATTGGCCTTTCTTGGAGACATTCCAATAGGGTCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATCTGAACCTTCCTCCACAGCCTCCAGCCCTTAGAGAGCTGTTTCAGTCTCTCCCCCGAGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGCGATGACATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTAACACCCTCTGTTGTTGGCAAGAGAAGAGGAGGAAAAGTTACCAAACATTATCCAACTGAGAAACAAAGAAGAGAACAACTTAATGGAAAATACAAAATCTTGAGGGATCTCATCCCAAACCCCTCCAAGATTGATAGAGCATCTGTGGTGGGCGATGCCATTGACTACATAAGAGAGCTTATTAGAACAGTTAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGGAAAGAGAGATGCAAGAGACCAAAAACAGAACAAGATGCTGCTGAGAGCTGTAACATAAAACCATTTGGTGATGCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGAAAATTCAAAGACAGTGAGGTTGATGTCAGAATAATAGATGATGAGGTCACAATCAAACTCTTTCAGAGAAAGAAAATCCACTGCCTGCTGTTTGTCTCCAAGATTCTGGATGAACTTCAGTTGGAGGTTCATCACGTTGCAGGAGGACATGTTGGTGAATATTGCAGTTTCTTGTTTAGTAGCAAGATAATGGAAGGTTCTTCTGTCTATGCAAGTGCCATAGCCAACAGGGTCATTGATGTTTTGGACGGTCAATACTCAACCACAGAACAACTATTAAAATAG 1542 0.4371 MTTRDRQKMHEQTGCFDPNTMGESVPSLMDNFPQTLPDPLTPSPMVVGSTTNTNNSLEENLRLSVEELSYNHHNSQHQEDVSTYASGVTATSIDFPHSQHLGLNMGNSYIDHTNNMDNHLVQEVIDALPYQQSIWDPTTVQELQDMTYANQIEQQQQQNEQQFQQIDTQNCSQSYNPSSILDPPYPSTDLLNLLHLPRCTASSLHTNPTICLTNPTQNTPNFHNPLAFLGDIPIGSDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGDDIEGDGSQLDMGVLEFNRVTPSVVGKRRGGKVTKHYPTEKQRREQLNGKYKILRDLIPNPSKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGKERCKRPKTEQDAAESCNIKPFGDADGGIRTSWLQRKFKDSEVDVRIIDDEVTIKLFQRKKIHCLLFVSKILDELQLEVHHVAGGHVGEYCSFLFSSKIMEGSSVYASAIANRVIDVLDGQYSTTEQLLK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00025 513 SMART finulus 323 372 IPR011598 GO:0046983
Spst3g00025 513 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g00025 513 Pfam Helix-loop-helix DNA-binding domain 320 366 IPR011598 GO:0046983
Spst3g00025 513 Coils Coil 149 169 - -
Spst3g00025 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 379 IPR036638 GO:0046983
Spst3g00025 513 CDD bHLH_AtMYC1_like 322 386 IPR045896 -
Spst3g00025 513 PANTHER TRANSCRIPTION FACTOR BHLH91 7 509 IPR045895 GO:0006355|GO:0048658
Spst3g00025 513 Gene3D - 314 389 IPR036638 GO:0046983
Spst3g00025 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00025 Spst-Chr3 793641 795620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00025 9 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 38.627 2.02e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g00025 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00025 - - gmx:100782512 842.802