Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00015 ATGGAGGCTGCGACGGAGAGAAAAATGAGGGTTAGGGCTGCGAGGCTGAATGGGAGTGGGGCTGGTTCAAATGATGGGAAAGGTGTAAAGCTTCGAATCTTCAAAGAATGCTCACATCCGGACGAAACACGACGACGTCAAATAGGAGAGGAGCTCGGGCTTGATGCTAAACAAGTTAAATTTTGGTTTCAGAACAAGAAGACACAATTAAGGACTAAAAGTGAGCGATTAGATATCAATGCTCTTCGTCTTGAGAACGAAAGAATACAATCAGAAAACCGCATAATGAGTGAGACTTTGAAGACTGTAGCTTGCGCACCTTGTGGGGGTCGAGCCATGGGACCAGAGGAGAGAGAACTTTATTTGCAAATCTTGAAGGTAGAAAATATTCTATTAATCAAAGAGGTTAGTGAACAATATATTTAA 426 0.4249 MEAATERKMRVRAARLNGSGAGSNDGKGVKLRIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLRTKSERLDINALRLENERIQSENRIMSETLKTVACAPCGGRAMGPEERELYLQILKVENILLIKEVSEQYI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00015 141 CDD homeodomain 32 74 IPR001356 GO:0003677
Spst3g00015 141 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 32 136 IPR042160 -
Spst3g00015 141 ProSiteProfiles 'Homeobox' domain profile. 34 73 IPR001356 GO:0003677
Spst3g00015 141 SMART HOX_1 26 77 IPR001356 GO:0003677
Spst3g00015 141 SUPERFAMILY Homeodomain-like 32 75 IPR009057 -
Spst3g00015 141 Coils Coil 67 99 - -
Spst3g00015 141 Pfam Homeodomain 32 71 IPR001356 GO:0003677
Spst3g00015 141 Gene3D - 6 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00015 Spst-Chr3 513940 521540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00015 34 135 Homeobox Transcription Factor Family AT5G17320 51.961 6.10e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst3g00015 Homeodomain 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00015 K09338 - aew:130778156 131.724