Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00014 ATGATAAATCCAAATTTGAACTTGGAACCCGACAATAATTCAGAAGGAAGTAGCCAAGGGGCTTCCAATGTATCCTTGTATGAAGCATCTTTTGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTTACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTCAATTCCAGTGATGGTGAGTTGAAAGGTTCTAGTGATGCTGGCAGTGAAGTGGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCTCAGGCATTAGGGGGGCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGAGAATGGGAATGTTCAGCGAGAGGTACACAAGTTTGGCATCCCTACCTCTTCACGGTTCACCTTTTAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACACATACCATCCTCACTGAGGGCACCTGATATGAGAGCCGCTGCAAGGTTTGAGAGAAACCATTTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGAAGTTTCAGACAGATAGACCACGGAGCTGGTGTTAATGAAGGACATGTTCAAAGTTCAAATGCTAGTCTAGCGCCAACGGTACCTCCTCCGCCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA 738 0.4539 MINPNLNLEPDNNSEGSSQGASNVSLYEASFDLTKGSTTTSSCLTKDETDPGSITLDLTLNFNSSDGELKGSSDAGSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFSERYTSLASLPLHGSPFRSLGLEAHSAMHQRHIPSSLRAPDMRAAARFERNHFGSLVFMEDDDVGFFWPGSFRQIDHGAGVNEGHVQSSNASLAPTVPPPPQASASPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00014 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Spst3g00014 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 166 IPR044246 GO:0009788
Spst3g00014 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Spst3g00014 245 Gene3D Classic Zinc Finger 81 141 - -
Spst3g00014 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Spst3g00014 245 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g00014 245 FunFam Zinc finger protein 2 72 140 - -
Spst3g00014 245 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00014 Spst-Chr3 479150 479887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00014 88 245 C2H2 Transcription Factor Family AT1G66140 45.699 2.10e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g00014 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00014 - - gmx:100775305 440.654