Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00013 ATGGCTAATTTGGTCATGCACGATAATGATAATGGTTCAATGACCTTCTTTTTCCTTGCATCAATATTCTTCGTCTTGGCAGCATCCATTAGTTCCCAAGAAGACAACAAATACGCAGAATGTAGCAAGCCATTCATCTGCGGACTTATGTCCATCTACTACCCTTTCTGGGGAGGGAGCAGACCGAGTTATTGTGCCAGCAACCACCAATTCGAGCTCAACTGTGAGAGTAATCAGAACTCCACCATTCAACTTGGCTCACAAACTTTTCAAGTGCTTCACTTTGATCCAGTTCAATACACCGTGACAATGGTTCGAACAGGCCTGGTCTATGATAATTGCTCTTCCCCAGCCATAACCAACACTTCCGTGGACCCAAATCTCTTTAGTTACTTGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCAACTCCTTGATTTCAAATAGCACACGTTCTTTTCCATGCAAGGAAGGTGGCGACAAGGGTGCTTTCTATGGAGATCCGGCAACTGTAAAAGTTCAAGACTGTGAAGGAGCTAGGATTGAAGTGCAAGTAGCACAGGAGCATGAGCCTGATGGGGGAATTCAAGGGATGAACAAAGCTTTGAGTGAAGGGTTTGAAGTACATCTTATTTCAGATGGTCAAGTTCAACAGTGCTTAGGATGCATTTCGACGAATGGAACATGTGGGGTTAATGATGAGTCTCAATTTTCGTGCTTTTGCCCGGATGGAAGTAAAGGTTTAGATTGTTCTCATCATCGTAGCGATAAATGGAATTGGCAAAGGAAGCTCGTTATTGGTGTTGCTGCTGCTGTGGTGACTGCAATTGTAGTTGGCCTTGGGTTTTACATCTATTATAGTCGTCAAAAGAAGAAGAATTATCTTCATGCAGTATCATCAACTGTGCTATCTAACTCTAAAGGAATCACATATAGTTCTTCTTTAGAAGACCCAGAGAAGGGATGTAAATACTTTGGAGTCCACTTCTTCACCTATAGTGAACTTGAAGAGGCCACAGACTTCTTTGACCCTGACAAAGAACTAGGAGACGGAGGATTTGGAAAAGTGTATTTTGGCAAACTTCAGGATGGACGTTTAGTTGCTGTGAAGAGAATGTATGAGAACAATTTCAAAAGAGTTGAGCAATTCGTGAATGAAGTGAAGATCTTAACTGGTCTACACCACCAAAACCTTGTGTCTCTATATGGATGCACTTCTCGCCACAGTAGAGAACTTCTTCTGGTATACGAATACATTCCAAATGGAACCGTTGCTGATCATCTTCATGGTAAAAGAGCAAAGCCTGGCACACTCCCCTGGCACATCAGAATGAACATTGCCATAGAAACTGCTAGTGCATTGGTATATCTCCACGCTTCTGACATCATCCACAGAGACGTCAAAACCAACAACATTCTCCTTGACAACCACTTCAGTGTCAAAGTAGCAGATTTTGGCCTCTCACGTCTCTTCCCAACCCATGCCACACACATTTCCACTGCCCCACAAGGGACTCCTGGTTATGTGGATCCGGAGTATCATGAGTACTATCAGCTCACTGATAAGAGTGATGTTTATAGCTTTGGGGTGGTGCTGATTGAGCTTATATCATCCATGCATGCGGTTGACATCTCAAGGCGCAGGCATGAGATAAACTTGTCCAACATGGCCATTAAGAAGATCCAAAGTGGTGCGTTGCACGAGATTGTGGATCCCACTCTAGGGTTTCAGTCGGACTTGAAGGTGAGGAAAATGATCAATGCAGTGGCTGAGTTGGCGTTTCAGTGCCTGCAGAGTTCCAAAGATGCGAGACCCTTTATGGCAGAAGTGTTGGATAGACTGGAGGATATAAGAAGTGATGGGAAGTATAAGAGCGAGCAGGAGGTGCTGAATATATCAGAAGATGATGCTGCTTTGCTCAGGAATCAACCACCTCCTCCTTCACCTTCACCTGATGATTTAAATTTGGTAACCATTTCTACACCTCCAAATGGTAGTATAGTTTAG 2013 0.4357 MANLVMHDNDNGSMTFFFLASIFFVLAASISSQEDNKYAECSKPFICGLMSIYYPFWGGSRPSYCASNHQFELNCESNQNSTIQLGSQTFQVLHFDPVQYTVTMVRTGLVYDNCSSPAITNTSVDPNLFSYLNVRNITIYYGCPNSLISNSTRSFPCKEGGDKGAFYGDPATVKVQDCEGARIEVQVAQEHEPDGGIQGMNKALSEGFEVHLISDGQVQQCLGCISTNGTCGVNDESQFSCFCPDGSKGLDCSHHRSDKWNWQRKLVIGVAAAVVTAIVVGLGFYIYYSRQKKKNYLHAVSSTVLSNSKGITYSSSLEDPEKGCKYFGVHFFTYSELEEATDFFDPDKELGDGGFGKVYFGKLQDGRLVAVKRMYENNFKRVEQFVNEVKILTGLHHQNLVSLYGCTSRHSRELLLVYEYIPNGTVADHLHGKRAKPGTLPWHIRMNIAIETASALVYLHASDIIHRDVKTNNILLDNHFSVKVADFGLSRLFPTHATHISTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEINLSNMAIKKIQSGALHEIVDPTLGFQSDLKVRKMINAVAELAFQCLQSSKDARPFMAEVLDRLEDIRSDGKYKSEQEVLNISEDDAALLRNQPPPPSPSPDDLNLVTISTPPNGSIV 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00013 670 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Spst3g00013 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Spst3g00013 670 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00013 670 Pfam Wall-associated receptor kinase C-terminal 175 246 IPR032872 -
Spst3g00013 670 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00013 670 MobiDBLite consensus disorder prediction 636 670 - -
Spst3g00013 670 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Spst3g00013 670 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Spst3g00013 670 Gene3D Phosphorylase Kinase; domain 1 315 420 - -
Spst3g00013 670 FunFam Wall-associated receptor kinase-like 20 421 629 - -
Spst3g00013 670 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Spst3g00013 670 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
Spst3g00013 670 SMART serkin_6 344 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00013 670 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 652 IPR044652 GO:0004672
Spst3g00013 670 MobiDBLite consensus disorder prediction 655 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00013 Spst-Chr3 413943 417219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00013 43 668 Receptor kinase-like Gene Family AT1G25390 42.485 2.23e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Spst3g00013 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00013 - - vra:106766190 1111.29