Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00004 ATGAGCATTTTTGACAATGGAACGCTTCTGCTGAATAACATATTGCAGAGTAATTTTGTTGGATTATTTGGTCAAATGAAATTTGAGCCAGATGGGTCTCTCGTTCATCCTGCCTATGGCGTCCTTAATGTGGTTGGAACTGGCCTTAGGAGGATTGGTTACTGGTCCAACTATTCAGGTTTGTCAATCGTATCTCCTGAGATATTGTATGCAAAACCACCTAATAGATCAAGTGCGAACCAGAAGCTTTATAGTGTGATATGGCCTGGAGAAATAGTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTCTCACCAGTGCAGGAAACTGAGACCTACATAGAACTTGTCAACCTAATCAGAACTGGTTACTTTGATGGTGCCATCGGTGACATTGCTATTGTCACAAATTGGACAAGGATTGTAGATTTTACGCAACCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCGTTCACAAAAATTAATCCAGGTGGTGGGAACGAGTTATGGAGGCATGATGGCTTACAATTTGGCCAAGATGTTGGGGGAAGAGAGTGGTCCCCAATTTTGGCAGTATCGCTTGTTTCTATGCTCCTTTATGTTTGGAGTAGAGAATTTTTGAAGCCCAAATCAACGTATATGGGCCTATTGCTCTTAAGGCCTTCTATCTTCCATGGGCAATGCTTGCTTTGGATGTCATTTATGGCTCGCCTCTTATACCTGACCTCTAAGGTATCAGGACATATGTACTACTTCTTAACAGTGTTGCATCCATTAGAAGGTGGAAAGAACATTTTGAAGACTCCAATGTGGCACAATCTCCCCCTGGGTTTCATCCACAACAACACTCACCCTCTTCTCATTCAATTCACTCGCCCTTCACTCACTCACCTCCACGCTCCCATTCTTCATATCACTCAAACCGAACCCCGCCACCCACATCTCGCCTCACCGCCACAGCCACACCCGCACACCATCTCATTTACTCTCCCCTTGAATCCCATTGCCCACGGCCTCACCCAAGCCCCACCATCGTGGCACCACCGCATCACCATTGCGAGCCCCTCGTCGCGGAGCCATCACCACCACCCTCATACTCAGCTCCAAGACCAAACCTCACCCACCGCGCACCCTTCATCCATCACCCTAACCGCGAACCGTCTTCACCCTCTCCCTATCGCGGCTCGCCACCCAAACCCTACTCCGGCAGTCTCCAACCACCTTCAACCCGCGCCACGATGTGTTCTTCGGTTGACCCCCCCCTCAATCTCGCCGCTCCCTCTCATGACCCATCTCACTCACCTGTTCCGTGGCCATCCCAGCCAAACTACCGACCCAACCTTGCATCACCTAGCTTTGGCCGCCACCGCGAAACCCTCTTGTTTTGGCCCCTATCACCTTGATTCCTTTACCTCTCGTGGTGGTCCAATTTGCCGGCGCGTTTGGTCTCGGAGTCGCGACCAAGCATTCGCGGGGGGCTCCTCCTCTCACTGTCCTCGTTGCAATCGACCCTTGGTGGTGGTGATGAGTTGA 1590 0.5006 MSIFDNGTLLLNNILQSNFVGLFGQMKFEPDGSLVHPAYGVLNVVGTGLRRIGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGEIVSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVQETETYIELVNLIRTGYFDGAIGDIAIVTNWTRIVDFTQPYAASGLVVVAPFTKINPGGGNELWRHDGLQFGQDVGGREWSPILAVSLVSMLLYVWSREFLKPKSTYMGLLLLRPSIFHGQCLLWMSFMARLLYLTSKVSGHMYYFLTVLHPLEGGKNILKTPMWHNLPLGFIHNNTHPLLIQFTRPSLTHLHAPILHITQTEPRHPHLASPPQPHPHTISFTLPLNPIAHGLTQAPPSWHHRITIASPSSRSHHHHPHTQLQDQTSPTAHPSSITLTANRLHPLPIAARHPNPTPAVSNHLQPAPRCVLRLTPPSISPLPLMTHLTHLFRGHPSQTTDPTLHHLALAATAKPSCFGPYHLDSFTSRGGPICRRVWSRSRDQAFAGGSSSHCPRCNRPLVVVMS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00004 529 Gene3D - 37 61 - -
Spst3g00004 529 SUPERFAMILY Periplasmic binding protein-like II 84 178 - -
Spst3g00004 529 Gene3D - 3 36 - -
Spst3g00004 529 Gene3D - 105 181 - -
Spst3g00004 529 MobiDBLite consensus disorder prediction 374 399 - -
Spst3g00004 529 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 179 IPR015683 -
Spst3g00004 529 SUPERFAMILY Periplasmic binding protein-like I 5 100 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00004 Spst-Chr3 205392 211194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00004 1 184 Ion Channels AT1G42540 51.818 1.49e-65 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00004 K05387 - gmx:102661260 317.005