Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02967 ATGCTAATCATATGGGCTAGCTCACGCCGGACCACAAGCCGCTACGTACACTCAGCCATCCAACATAGGTGGGTCCCACAGTCCACCACACTGGTCATTCTCTACCTCGGCTTGCTTCGCCGCATATACGTAGCCGCGGCTACCTTAGCTGCTTTCCAAAGATCTGTGAAGACTGCTGTTGCTAGCTTGATCTCTACTGAACGAACCACCGTCAGGGATCCTTGTTCTAAATTATCGATGACCCAACAGAGGGAGAACATGGATACTTTCACTCATGTCCCCCCCGGTTTTAGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAATTGCTTCAAGGAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCAAAGCATGATCTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGCCGAGCTCCAAATGGACAAAAGTCTGATTGGATAATGCATGAATATCGGCTTGAAACTGATGAAAATGGCACTCCACAGGCAATTGTCTCATTACATCCCCGTAAAGTAACGATTGTTTTTGTCCTTCACGTGGAAACTTCAAATTTTGTATGTCTGAAGCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGAGTGAGCACGACTCCCCTTGTTGGTATGAAGACCAAGTGCCTTTCATTCCAGACATGGACTCACCAAAGCAAACCTCTCAATCTAATTTGATCTACCAGCTTCCGTATCCTTGCAAGAAAGAGCTAGAATTGCCATACCAATTGCCTCACGACCACTTCCTCCAGCTTCCACTTCTAGAGAGCCCAAAACTGCTTCAATCTGCTTCAGCCATAACCCCTAATCCCATGGCACCATATCTTGTAGATCATGTAAACCACTCCACTACTCTGCTTCCCTCATTACTCATACAAGAGGAACAGGTTATGGGTCAGCAAATAAACTATCAGGCAAATTATGGCAACAACAACAACTCCAATGAACAAGCAGTGGATCAAGTAACTGATTGGCGAGTGCTTCACAAGTTTGTTGCTTCACAACTCAGTCAAGATGCATGCAAAGACAATACCTACTCAAACACCTCAGCCAATATCTTTCACGGCACGGACAATGGCAACTGCAACGTCCAGTTCAGACATTTGGACAAACAAGAGATAGTGGTGCCTCAAGAAAATGCGTCAACATCAAACTCCAGCTGCCCAGTTGCATTGTGGAAATAG 1431 0.443 MLIIWASSRRTTSRYVHSAIQHRWVPQSTTLVILYLGLLRRIYVAAATLAAFQRSVKTAVASLISTERTTVRDPCSKLSMTQQRENMDTFTHVPPGFRFHPTDEELVDYYLRKKIASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQAIVSLHPRKVTIVFVLHVETSNFVCLKQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYEDQVPFIPDMDSPKQTSQSNLIYQLPYPCKKELELPYQLPHDHFLQLPLLESPKLLQSASAITPNPMAPYLVDHVNHSTTLLPSLLIQEEQVMGQQINYQANYGNNNNSNEQAVDQVTDWRVLHKFVASQLSQDACKDNTYSNTSANIFHGTDNGNCNVQFRHLDKQEIVVPQENASTSNSSCPVALWK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02967 476 Gene3D NAC domain 102 273 IPR036093 GO:0003677|GO:0006355
Spst2g02967 476 ProSiteProfiles NAC domain profile. 93 270 IPR003441 GO:0003677|GO:0006355
Spst2g02967 476 Pfam No apical meristem (NAM) protein 94 221 IPR003441 GO:0003677|GO:0006355
Spst2g02967 476 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 92 393 - -
Spst2g02967 476 SUPERFAMILY NAC domain 90 270 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02967 Spst-Chr2 29410494 29416895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02967 87 476 NAC Transcription Factor Family AT1G12260 51.508 1.81e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst2g02967 NAM 7.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02967 - - gmx:100809525 603.594