Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02965 ATGAACCCTGATCCACAAATTCCCTTGCTGAGTCCTCCAGGTTTTCTAAGGAGGGAAAGTGGGGGGAGAGCACAAAAGGGTGCCCTTCTTTTCATTCTTTCCATCGTTTTCCTAATGTCATTGGCTGCACTCTTCATAAGCCTGCATGGCCATGAACCCTTAGAGAATAACATTCTGAAGCTTTTCAGTAAGGAAACCAAGTCCCTTCCATTGCAACCTAGAGGGGTTGCTGAAGGGGTTTCACCCAAGTCAAATCCATATCTGTCACTGAAAGGTTCATTTAATTGGACAAATGCCATGTTATCGTGGCAGAGAACAGCTTTCCATTTTCAACCTCAGAAAAACTGGATGAACGGTCCATTGTTTTACATGGGGTGGTACCATATATTTTACCAATACAATCCTGATTCAGCTGTGTTTGCCAACATATCGTGGGGCCACGCTGTATCAAGGGACATGGTTCACTGGCTCTACCTTCCCGTTGCGATGCATCGAGATTCGTGGTTCGATATCAACGGTGTGTGGTCAGGATCAGCCACCCTTTTGCCAGATGGCAAAATCGTGATGCTTTACACGGGTAACACTCATCAAAACGTGCAAGTTCAGAATCTTGCGTACCCCGCCAACCTATCCGATCCCCTCCTCGTTCATTGGGTCAAATATCCTGATAACCCGGTCTTGGTGCCCCCACAAGGGATTGGGCCGAAAGATTTTCGTGACCCAACAACTGCCTGGATTGGGCCGGATCAGAAATGGAGGATCGCTATTGGGTCGAAGGTCAACCGGACAGGTCTTTCATTGGTGTATAAAACCCAAGATTTCATCCACTATGAACTCAACGATGAGTATATGCATGGGGTCCCGGGTACGGGTATGTGGGAGTGCGTGGACTTTTACCCGGTTTCAGTAAATGGGTCTGATGGGTTGGATACATCCGTAAATGGGCCGAATGTGAAACATGTGTTGAAGTCCAGTTTGGATGACACAAGGGGGGATCATTACGCGATCGGGACCTACTTCATTGAAAATGATACATGGGTACCCGATAACCCGGATGAGGATGTGGGTATCGGGTTGAAGTTGGATTATGGGAGATTTTATGCGTCAAAGACATTTTATGACCAATACAAAAAGAGAAGGGTCCTGTGGGGTTGGATCAACGAATCAGATAGCGAAACCGCTGACTTGAAAAAGGGTTGGGCATCTCTTCAGAGTATTCCAAGAACAGTGGTGTTTGACAACAAGACTAGAACTCATTTGCTTCAGTGGCCAGTGGAAGAAATAGAGAGCTTAAGGCTTAGCAGTTATGATTTTGAAGAAGTTGTGGTTAAGCCTGGCTCGGTTGTGCCACTGGACATAGGCCCAGCCACACAGTTGGACATATTTGCTGAATTTGAAATAGAATATTTAGTATCCCAAACTGGCAAGAAGGAGGACGATGTAGGGTGTGGAAATGGAGCTGTTGACAGAAGTAGTTTGGGACCATTTGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAGCTTACACCAATTTATTTTCATCTTTCTAGTACCACCAGCAGTTTAACCACTTCCTTCTGTGTTGATGAAACAAGGTCTTCTAAGGCTCCTGATGTTTCAAAACTCGTTTTTGGAAGCCGAGTTCCAGTGGTGGACCATTCAGTCATTGAAAGCTTTGCTCAGGGAGGGAGGACTGTGATCTCATCAAGAGTTTATCCAACAGAAGCAATATACGGAGCTGCAAGATTGTTTGTGTTCAACAACGCAACAGACATAAACATCAAGGTTACCTTCTGCAAGCGCCGAGCTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTGATTGAGAGGTACATGAAGTTCACACGAGGGTCTCTACCTGAAGCACCACCACCTCAACCACCTCCTCTGGATGCAAAGGAGGAATCTACCCTGCTAAAACAAGAAATCCAAACTTTGCAAAAGGGTATCAGGTAA 2067 0.4606 MNPDPQIPLLSPPGFLRRESGGRAQKGALLFILSIVFLMSLAALFISLHGHEPLENNILKLFSKETKSLPLQPRGVAEGVSPKSNPYLSLKGSFNWTNAMLSWQRTAFHFQPQKNWMNGPLFYMGWYHIFYQYNPDSAVFANISWGHAVSRDMVHWLYLPVAMHRDSWFDINGVWSGSATLLPDGKIVMLYTGNTHQNVQVQNLAYPANLSDPLLVHWVKYPDNPVLVPPQGIGPKDFRDPTTAWIGPDQKWRIAIGSKVNRTGLSLVYKTQDFIHYELNDEYMHGVPGTGMWECVDFYPVSVNGSDGLDTSVNGPNVKHVLKSSLDDTRGDHYAIGTYFIENDTWVPDNPDEDVGIGLKLDYGRFYASKTFYDQYKKRRVLWGWINESDSETADLKKGWASLQSIPRTVVFDNKTRTHLLQWPVEEIESLRLSSYDFEEVVVKPGSVVPLDIGPATQLDIFAEFEIEYLVSQTGKKEDDVGCGNGAVDRSSLGPFGILAIADDQLSELTPIYFHLSSTTSSLTTSFCVDETRSSKAPDVSKLVFGSRVPVVDHSVIESFAQGGRTVISSRVYPTEAIYGAARLFVFNNATDINIKVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKFTRGSLPEAPPPQPPPLDAKEESTLLKQEIQTLQKGIR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02965 688 Gene3D - 597 654 IPR036879 GO:0003677|GO:0046983
Spst2g02965 688 SMART glyco_32 109 564 IPR001362 GO:0004553|GO:0005975
Spst2g02965 688 ProSiteProfiles MADS-box domain profile. 579 639 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 424 594 IPR013320 -
Spst2g02965 688 Pfam Beta-fructofuranosidase, N-terminal domain 22 101 IPR021792 GO:0004564
Spst2g02965 688 Pfam Glycosyl hydrolases family 32 C terminal 427 595 IPR013189 -
Spst2g02965 688 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 596 634 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 CDD GH32_Fruct1-like 115 410 - -
Spst2g02965 688 SMART madsneu2 579 638 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 SUPERFAMILY Arabinanase/levansucrase/invertase 102 425 IPR023296 -
Spst2g02965 688 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 113 436 - -
Spst2g02965 688 CDD MADS_MEF2_like 592 656 IPR033896 GO:0000977|GO:0045944
Spst2g02965 688 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 48 597 - -
Spst2g02965 688 Pfam Glycosyl hydrolases family 32 N-terminal domain 109 424 IPR013148 -
Spst2g02965 688 Gene3D - 437 596 - -
Spst2g02965 688 PRINTS MADS domain signature 601 616 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 PRINTS MADS domain signature 581 601 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 PRINTS MADS domain signature 616 637 IPR002100 GO:0003677|GO:0046983
Spst2g02965 688 Gene3D Glycosyl hydrolase domain; family 43 113 436 IPR023296 -
Spst2g02965 688 SUPERFAMILY SRF-like 592 653 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02965 Spst-Chr2 29390899 29397795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02965 1 600 Glycoside Hydrolase AT1G12240 55.450 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst2g02965 Glyco_hydro_32N 3.2e-97 CL0143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02965 K01193 - gmx:100814788 983.015