Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02964 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATTCTGCACCCGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCGTACTCCCATTCTGGGGCAACCTTTACACATGGAATGTTATTAACTATCCCGAGGAAGAAGACAGGGATTCTTGAAGATGTCCGCTGTAGTGGTTGGTTGGATGCCATGAAGTCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTAGCCATGGGTTTGCATCATCGGACTCTGATACTGCCGGTGCTTATTTTAGCTGGCTGCTCAAATACCCATCTGCGCTTACATGTTTTGATCAAATCACAACCTATGCAAAAGGAAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCCGACAATATGCGTGCAGCTGTTAAAAAAGTGGCAGAATATTTTCCAACAGCAATTATTAGTGGAAGAAGTCGTGATAAGGTATATCAATTTGTGGGACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATGATCACCCGAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAACTTGTTCCAACCTGCTGCTGAGTTTCTGCCCATGATTAATGAGGTACTTAAGTCTCTTGATGAGTGTACGAAAGACATTAAAGGTGCTAAGGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTTGATGACAAGTATTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGGAAAGCAGTCACGTTTTTACTTGAGTCGCTTGGGCTAAACAATTGTGATGATGTCCTTCCTATATATATCGGAGATGATCGGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCATCACCCAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTGTTATGGAAGTTAAGCTCCTTAAAAAGTCTTATATAG 1170 0.4274 MDLKSNHTPVLTDSAPVTKSRLGVHSSLLPYSHSGATFTHGMLLTIPRKKTGILEDVRCSGWLDAMKSSSPPARKITKDVSHGFASSDSDTAGAYFSWLLKYPSALTCFDQITTYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDDHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDDKYWDLVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSSPKESNAVYSLRDPSEVMEFLKSLVLWKLSSLKSLI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02964 389 NCBIfam HAD-IIB family hydrolase 123 341 IPR006379 -
Spst2g02964 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 384 IPR044651 GO:0004805|GO:0005992
Spst2g02964 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Spst2g02964 389 NCBIfam trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Spst2g02964 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Spst2g02964 389 CDD HAD_TPP 122 372 - -
Spst2g02964 389 Gene3D - 219 386 IPR023214 -
Spst2g02964 389 Gene3D - 121 212 IPR023214 -
Spst2g02964 389 FunFam Trehalose 6-phosphate phosphatase 228 387 - -
Spst2g02964 389 FunFam Trehalose 6-phosphate phosphatase 121 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02964 Spst-Chr2 29384452 29386710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02964 112 377 Trehalose Biosynthesis Gene Families AT1G70290 26.148 6.28e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02964 K01087 - gmx:100775207 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02964 2 29384452 29386710 Spst2g02964 2 29384452 29386710 ECH